Results 61 - 80 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13966 | 3' | -54.3 | NC_003521.1 | + | 125018 | 0.68 | 0.951661 |
Target: 5'- cGCAgCagGCUGCGCAUC---CGCGGGu -3' miRNA: 3'- -CGUaGagCGACGCGUAGuucGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 101663 | 0.68 | 0.947527 |
Target: 5'- cGCGUCUCGaUGaaguugGCGUCGGGCGaGGGg -3' miRNA: 3'- -CGUAGAGCgACg-----CGUAGUUCGCgCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 178822 | 0.69 | 0.917898 |
Target: 5'- gGUAUCUCGUgaacuCGC-UCAggcGGCGCGGGg -3' miRNA: 3'- -CGUAGAGCGac---GCGuAGU---UCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 110639 | 0.69 | 0.915626 |
Target: 5'- gGCAUCUCGCcggGCGCcggcacgGUCAcggcccggucggccAGCGCGu- -3' miRNA: 3'- -CGUAGAGCGa--CGCG-------UAGU--------------UCGCGCuc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 213901 | 0.69 | 0.912147 |
Target: 5'- aGCGagUCGCgaGCGUGUCugGAGCGCGGu -3' miRNA: 3'- -CGUagAGCGa-CGCGUAG--UUCGCGCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 180546 | 0.69 | 0.912147 |
Target: 5'- cCGUCUcCGCgGCGUAcCGggguGGCGCGAGa -3' miRNA: 3'- cGUAGA-GCGaCGCGUaGU----UCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 83956 | 0.69 | 0.928185 |
Target: 5'- cGCccgCUCGC-GCGUccacaacGUCAcGCGCGAGg -3' miRNA: 3'- -CGua-GAGCGaCGCG-------UAGUuCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 137928 | 0.69 | 0.917898 |
Target: 5'- cGgAUCUCGUcGCGCAc--GGCGCGAa -3' miRNA: 3'- -CgUAGAGCGaCGCGUaguUCGCGCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 226177 | 0.69 | 0.917898 |
Target: 5'- gGUGUUcCGUcaccgGCGCuUCGAGCGCGAGc -3' miRNA: 3'- -CGUAGaGCGa----CGCGuAGUUCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 128767 | 0.69 | 0.912147 |
Target: 5'- aGCGaCUCGCUGuCGCAggCcGGCGCGc- -3' miRNA: 3'- -CGUaGAGCGAC-GCGUa-GuUCGCGCuc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 53347 | 0.69 | 0.923417 |
Target: 5'- uCGUCUCGaauggcCUGCGCAacuUCGcgccccuGCGCGAGg -3' miRNA: 3'- cGUAGAGC------GACGCGU---AGUu------CGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 42942 | 0.7 | 0.89352 |
Target: 5'- aCAUC-CGCUGCcgccuGCAgcccagCGAGCGCGAc -3' miRNA: 3'- cGUAGaGCGACG-----CGUa-----GUUCGCGCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 239798 | 0.7 | 0.879983 |
Target: 5'- cCAUCUgGCUGCGCggCGugauGCGCGc- -3' miRNA: 3'- cGUAGAgCGACGCGuaGUu---CGCGCuc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 117981 | 0.7 | 0.88276 |
Target: 5'- aGCG-CUacgacgaGCUGCGCGacgccauccacgagcUCAAGCGCGAu -3' miRNA: 3'- -CGUaGAg------CGACGCGU---------------AGUUCGCGCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 152260 | 0.7 | 0.865587 |
Target: 5'- uGCAcuUCUCGCUGUGCAccauccucUCGuGCGUaGAGa -3' miRNA: 3'- -CGU--AGAGCGACGCGU--------AGUuCGCG-CUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 201517 | 0.7 | 0.879983 |
Target: 5'- cCAUCUgGCUGCGCggCGugauGCGCGc- -3' miRNA: 3'- cGUAGAgCGACGCGuaGUu---CGCGCuc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 198514 | 0.71 | 0.825288 |
Target: 5'- gGCua-UCGCUGCgGCGUCAgccagcuauugauAGCGCGAc -3' miRNA: 3'- -CGuagAGCGACG-CGUAGU-------------UCGCGCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 221619 | 0.71 | 0.826124 |
Target: 5'- cCAUgUCGCUGCGCGgcCAGGUGCa-- -3' miRNA: 3'- cGUAgAGCGACGCGUa-GUUCGCGcuc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 90319 | 0.71 | 0.850373 |
Target: 5'- cGCGUgUgCGCUcGCGCGacgacgggCGGGCGCGAGc -3' miRNA: 3'- -CGUAgA-GCGA-CGCGUa-------GUUCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 67564 | 0.71 | 0.85808 |
Target: 5'- uGCAgaaCUCGUcGgGCGUCAGGCGCa-- -3' miRNA: 3'- -CGUa--GAGCGaCgCGUAGUUCGCGcuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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