miRNA display CGI


Results 41 - 60 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 3' -54.3 NC_003521.1 + 128767 0.69 0.912147
Target:  5'- aGCGaCUCGCUGuCGCAggCcGGCGCGc- -3'
miRNA:   3'- -CGUaGAGCGAC-GCGUa-GuUCGCGCuc -5'
13966 3' -54.3 NC_003521.1 + 128452 0.68 0.946243
Target:  5'- aGCG-CUCGCccagGCGgAUCAcguccaugggcagcGGCGUGAGg -3'
miRNA:   3'- -CGUaGAGCGa---CGCgUAGU--------------UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 128320 0.68 0.949208
Target:  5'- gGCAUCg-GCgGCGCGUCggccacuucuaccgcGugcGGCGCGAGg -3'
miRNA:   3'- -CGUAGagCGaCGCGUAG---------------U---UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 125018 0.68 0.951661
Target:  5'- cGCAgCagGCUGCGCAUC---CGCGGGu -3'
miRNA:   3'- -CGUaGagCGACGCGUAGuucGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 123178 0.73 0.754493
Target:  5'- cCGUCUCGCgGCGCAgucgCAGGCG-GAa -3'
miRNA:   3'- cGUAGAGCGaCGCGUa---GUUCGCgCUc -5'
13966 3' -54.3 NC_003521.1 + 122474 0.72 0.800331
Target:  5'- cGCG-CUCGCagGCaGCAUgGAGuCGCGAGg -3'
miRNA:   3'- -CGUaGAGCGa-CG-CGUAgUUC-GCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 121486 0.72 0.773205
Target:  5'- aCAUCUUccuggaGCUGCGCGcCcuGCGCGAGa -3'
miRNA:   3'- cGUAGAG------CGACGCGUaGuuCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 118788 0.72 0.791426
Target:  5'- uGCAUCUCGCUGCGgAggUAGGagGUGGGu -3'
miRNA:   3'- -CGUAGAGCGACGCgUa-GUUCg-CGCUC- -5'
13966 3' -54.3 NC_003521.1 + 117981 0.7 0.88276
Target:  5'- aGCG-CUacgacgaGCUGCGCGacgccauccacgagcUCAAGCGCGAu -3'
miRNA:   3'- -CGUaGAg------CGACGCGU---------------AGUUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 113436 0.66 0.977032
Target:  5'- gGCAcCUCGCgGCcCAUCuuGGCcGCGAGc -3'
miRNA:   3'- -CGUaGAGCGaCGcGUAGu-UCG-CGCUC- -5'
13966 3' -54.3 NC_003521.1 + 112214 0.66 0.979323
Target:  5'- aGCGgaggCGCUGCucaAUCAgcAGUGCGAGg -3'
miRNA:   3'- -CGUaga-GCGACGcg-UAGU--UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 110639 0.69 0.915626
Target:  5'- gGCAUCUCGCcggGCGCcggcacgGUCAcggcccggucggccAGCGCGu- -3'
miRNA:   3'- -CGUAGAGCGa--CGCG-------UAGU--------------UCGCGCuc -5'
13966 3' -54.3 NC_003521.1 + 110363 0.67 0.970213
Target:  5'- aGCAggagCGCUgGCGCGUCGucgaucgucgcccguAGUGCGAa -3'
miRNA:   3'- -CGUaga-GCGA-CGCGUAGU---------------UCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 109472 0.66 0.974561
Target:  5'- cGCGUCUgGgaacaUGCGCGcCAGGCGCu-- -3'
miRNA:   3'- -CGUAGAgCg----ACGCGUaGUUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 104480 0.66 0.978654
Target:  5'- aCGUcCUCGCUGgGCugcagcagcacguaAUCGgccacgGGCGCGGGg -3'
miRNA:   3'- cGUA-GAGCGACgCG--------------UAGU------UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 103397 0.74 0.663092
Target:  5'- cGCGUgCUCGCggaagguguugaucUGCGCGUCGAcguGCGUGAGc -3'
miRNA:   3'- -CGUA-GAGCG--------------ACGCGUAGUU---CGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 102321 0.67 0.969047
Target:  5'- gGCAUCgUCGUcgUGCGCGU-GGGCGcCGAc -3'
miRNA:   3'- -CGUAG-AGCG--ACGCGUAgUUCGC-GCUc -5'
13966 3' -54.3 NC_003521.1 + 101984 0.66 0.979323
Target:  5'- cCAUCUCGCccccgccGCGCAUCGugcugAGCGUa-- -3'
miRNA:   3'- cGUAGAGCGa------CGCGUAGU-----UCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 101666 0.67 0.969047
Target:  5'- cGCAcgggcUCUC-CUGCGUggccGUCAagcGGCGCGAc -3'
miRNA:   3'- -CGU-----AGAGcGACGCG----UAGU---UCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 101663 0.68 0.947527
Target:  5'- cGCGUCUCGaUGaaguugGCGUCGGGCGaGGGg -3'
miRNA:   3'- -CGUAGAGCgACg-----CGUAGUUCGCgCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.