Results 81 - 100 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13966 | 3' | -54.3 | NC_003521.1 | + | 58941 | 0.74 | 0.70603 |
Target: 5'- gGCAUgacCUCGCUGCucaccuGCGUCAuGCGCGGc -3' miRNA: 3'- -CGUA---GAGCGACG------CGUAGUuCGCGCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 143746 | 0.76 | 0.575472 |
Target: 5'- cCGUCUCGCUGUGC-UUgcGCGCGAu -3' miRNA: 3'- cGUAGAGCGACGCGuAGuuCGCGCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 153982 | 0.77 | 0.544733 |
Target: 5'- gGCAUCgugcCGCUgguggacGCGCGUCccaagGAGCGCGAGg -3' miRNA: 3'- -CGUAGa---GCGA-------CGCGUAG-----UUCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 66423 | 0.77 | 0.526155 |
Target: 5'- aCAUCUguUGCUGCGCGcgcugCGGGUGCGAGg -3' miRNA: 3'- cGUAGA--GCGACGCGUa----GUUCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 90319 | 0.71 | 0.850373 |
Target: 5'- cGCGUgUgCGCUcGCGCGacgacgggCGGGCGCGAGc -3' miRNA: 3'- -CGUAgA-GCGA-CGCGUa-------GUUCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 67564 | 0.71 | 0.85808 |
Target: 5'- uGCAgaaCUCGUcGgGCGUCAGGCGCa-- -3' miRNA: 3'- -CGUa--GAGCGaCgCGUAGUUCGCGcuc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 152260 | 0.7 | 0.865587 |
Target: 5'- uGCAcuUCUCGCUGUGCAccauccucUCGuGCGUaGAGa -3' miRNA: 3'- -CGU--AGAGCGACGCGU--------AGUuCGCG-CUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 232668 | 0.68 | 0.943167 |
Target: 5'- gGCGUUgccgugcCGCagGCGCAgCcAGCGCGAGa -3' miRNA: 3'- -CGUAGa------GCGa-CGCGUaGuUCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 30594 | 0.68 | 0.943167 |
Target: 5'- cGCcgaCUCGCUgGCGCAguugcUgGAGCGCGGu -3' miRNA: 3'- -CGua-GAGCGA-CGCGU-----AgUUCGCGCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 140372 | 0.68 | 0.938577 |
Target: 5'- gGCGg--CGCUGUGUcgCAAGCGCu-- -3' miRNA: 3'- -CGUagaGCGACGCGuaGUUCGCGcuc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 225873 | 0.68 | 0.938577 |
Target: 5'- aCAUCgugggGCUGCagGCGgcCGAGCGCGAGg -3' miRNA: 3'- cGUAGag---CGACG--CGUa-GUUCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 89254 | 0.68 | 0.938106 |
Target: 5'- gGCAUUUCuguaccugaccaaGCUGgGCGaCGAGaCGCGAGa -3' miRNA: 3'- -CGUAGAG-------------CGACgCGUaGUUC-GCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 70811 | 0.68 | 0.933756 |
Target: 5'- cGCGagUgGCUGCuGUGUCGgccggccgAGCGCGAGg -3' miRNA: 3'- -CGUagAgCGACG-CGUAGU--------UCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 75112 | 0.68 | 0.933756 |
Target: 5'- uGCAggUCG-UGCaGCGUgAGGCGCGGGa -3' miRNA: 3'- -CGUagAGCgACG-CGUAgUUCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 83956 | 0.69 | 0.928185 |
Target: 5'- cGCccgCUCGC-GCGUccacaacGUCAcGCGCGAGg -3' miRNA: 3'- -CGua-GAGCGaCGCG-------UAGUuCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 53347 | 0.69 | 0.923417 |
Target: 5'- uCGUCUCGaauggcCUGCGCAacuUCGcgccccuGCGCGAGg -3' miRNA: 3'- cGUAGAGC------GACGCGU---AGUu------CGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 137928 | 0.69 | 0.917898 |
Target: 5'- cGgAUCUCGUcGCGCAc--GGCGCGAa -3' miRNA: 3'- -CgUAGAGCGaCGCGUaguUCGCGCUc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 226177 | 0.69 | 0.917898 |
Target: 5'- gGUGUUcCGUcaccgGCGCuUCGAGCGCGAGc -3' miRNA: 3'- -CGUAGaGCGa----CGCGuAGUUCGCGCUC- -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 128767 | 0.69 | 0.912147 |
Target: 5'- aGCGaCUCGCUGuCGCAggCcGGCGCGc- -3' miRNA: 3'- -CGUaGAGCGAC-GCGUa-GuUCGCGCuc -5' |
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13966 | 3' | -54.3 | NC_003521.1 | + | 201517 | 0.7 | 0.879983 |
Target: 5'- cCAUCUgGCUGCGCggCGugauGCGCGc- -3' miRNA: 3'- cGUAGAgCGACGCGuaGUu---CGCGCuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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