miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 3' -54.3 NC_003521.1 + 55370 0.67 0.972176
Target:  5'- cGCGUCUCGCcggGUGCGgaggugaucgccgagCGGGUGCGc- -3'
miRNA:   3'- -CGUAGAGCGa--CGCGUa--------------GUUCGCGCuc -5'
13966 3' -54.3 NC_003521.1 + 70195 0.67 0.965993
Target:  5'- gGCGUCcggCGUcGCGaagCAGGCGCGAc -3'
miRNA:   3'- -CGUAGa--GCGaCGCguaGUUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 70811 0.68 0.933756
Target:  5'- cGCGagUgGCUGCuGUGUCGgccggccgAGCGCGAGg -3'
miRNA:   3'- -CGUagAgCGACG-CGUAGU--------UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 144083 0.67 0.971902
Target:  5'- cGCAcgaUCUCGCUGgGguU---GCGCGGGu -3'
miRNA:   3'- -CGU---AGAGCGACgCguAguuCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 75112 0.68 0.933756
Target:  5'- uGCAggUCG-UGCaGCGUgAGGCGCGGGa -3'
miRNA:   3'- -CGUagAGCgACG-CGUAgUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 75301 0.66 0.981439
Target:  5'- uGCucCUCGCacgagGUGCAggCGAuGCGCGAGa -3'
miRNA:   3'- -CGuaGAGCGa----CGCGUa-GUU-CGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 225873 0.68 0.938577
Target:  5'- aCAUCgugggGCUGCagGCGgcCGAGCGCGAGg -3'
miRNA:   3'- cGUAGag---CGACG--CGUa-GUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 77444 0.66 0.979323
Target:  5'- uGCGggcCUCGgUGCGCGUCucGGUGCu-- -3'
miRNA:   3'- -CGUa--GAGCgACGCGUAGu-UCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 101984 0.66 0.979323
Target:  5'- cCAUCUCGCccccgccGCGCAUCGugcugAGCGUa-- -3'
miRNA:   3'- cGUAGAGCGa------CGCGUAGU-----UCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 149895 0.66 0.977032
Target:  5'- aGCAcCUCGCcgGCgGCGUCcAGCGCc-- -3'
miRNA:   3'- -CGUaGAGCGa-CG-CGUAGuUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 113436 0.66 0.977032
Target:  5'- gGCAcCUCGCgGCcCAUCuuGGCcGCGAGc -3'
miRNA:   3'- -CGUaGAGCGaCGcGUAGu-UCG-CGCUC- -5'
13966 3' -54.3 NC_003521.1 + 61015 0.66 0.97631
Target:  5'- cGCAcgaUgUCGUUGCGCGUCAccccguccagggagGGCaGCGGc -3'
miRNA:   3'- -CGU---AgAGCGACGCGUAGU--------------UCG-CGCUc -5'
13966 3' -54.3 NC_003521.1 + 213495 0.66 0.974561
Target:  5'- cGCggCUCGCUGCuCAUCua-CGUGGGc -3'
miRNA:   3'- -CGuaGAGCGACGcGUAGuucGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 27930 0.67 0.969047
Target:  5'- cGCG-CUCGCUcGUGUGUCugucccacguGCGCGGGu -3'
miRNA:   3'- -CGUaGAGCGA-CGCGUAGuu--------CGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 191796 0.67 0.969047
Target:  5'- aGCAUaaaUGCcaGCGCGUCGAGCGCc-- -3'
miRNA:   3'- -CGUAga-GCGa-CGCGUAGUUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 101666 0.67 0.969047
Target:  5'- cGCAcgggcUCUC-CUGCGUggccGUCAagcGGCGCGAc -3'
miRNA:   3'- -CGU-----AGAGcGACGCG----UAGU---UCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 29460 0.67 0.969047
Target:  5'- gGUA-CUCGUUGCGCAgCGAGgGCa-- -3'
miRNA:   3'- -CGUaGAGCGACGCGUaGUUCgCGcuc -5'
13966 3' -54.3 NC_003521.1 + 154926 0.67 0.959259
Target:  5'- aGCGUCUCGCUGCcgGCcUC-GGCcaGCGGc -3'
miRNA:   3'- -CGUAGAGCGACG--CGuAGuUCG--CGCUc -5'
13966 3' -54.3 NC_003521.1 + 128320 0.68 0.949208
Target:  5'- gGCAUCg-GCgGCGCGUCggccacuucuaccgcGugcGGCGCGAGg -3'
miRNA:   3'- -CGUAGagCGaCGCGUAG---------------U---UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 232668 0.68 0.943167
Target:  5'- gGCGUUgccgugcCGCagGCGCAgCcAGCGCGAGa -3'
miRNA:   3'- -CGUAGa------GCGa-CGCGUaGuUCGCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.