miRNA display CGI


Results 61 - 80 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 3' -54.3 NC_003521.1 + 130047 0.66 0.977032
Target:  5'- gGCcUCggcgCGCacgUGCGCGggaCAGGCGCGGu -3'
miRNA:   3'- -CGuAGa---GCG---ACGCGUa--GUUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 61015 0.66 0.97631
Target:  5'- cGCAcgaUgUCGUUGCGCGUCAccccguccagggagGGCaGCGGc -3'
miRNA:   3'- -CGU---AgAGCGACGCGUAGU--------------UCG-CGCUc -5'
13966 3' -54.3 NC_003521.1 + 69991 0.73 0.735361
Target:  5'- cGCGUCUCGUcGUGCAgucccagCGAGCGCa-- -3'
miRNA:   3'- -CGUAGAGCGaCGCGUa------GUUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 117981 0.7 0.88276
Target:  5'- aGCG-CUacgacgaGCUGCGCGacgccauccacgagcUCAAGCGCGAu -3'
miRNA:   3'- -CGUaGAg------CGACGCGU---------------AGUUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 88382 0.72 0.817688
Target:  5'- aGCGUCUCGCUGa-CGUCGGGCacguaGAGg -3'
miRNA:   3'- -CGUAGAGCGACgcGUAGUUCGcg---CUC- -5'
13966 3' -54.3 NC_003521.1 + 118788 0.72 0.791426
Target:  5'- uGCAUCUCGCUGCGgAggUAGGagGUGGGu -3'
miRNA:   3'- -CGUAGAGCGACGCgUa-GUUCg-CGCUC- -5'
13966 3' -54.3 NC_003521.1 + 42942 0.7 0.89352
Target:  5'- aCAUC-CGCUGCcgccuGCAgcccagCGAGCGCGAc -3'
miRNA:   3'- cGUAGaGCGACG-----CGUa-----GUUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 180546 0.69 0.912147
Target:  5'- cCGUCUcCGCgGCGUAcCGggguGGCGCGAGa -3'
miRNA:   3'- cGUAGA-GCGaCGCGUaGU----UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 213901 0.69 0.912147
Target:  5'- aGCGagUCGCgaGCGUGUCugGAGCGCGGu -3'
miRNA:   3'- -CGUagAGCGa-CGCGUAG--UUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 234133 0.67 0.971347
Target:  5'- aGCAgcgCUCGCggGCGCAggcccugcagcaCGAGCGgGAc -3'
miRNA:   3'- -CGUa--GAGCGa-CGCGUa-----------GUUCGCgCUc -5'
13966 3' -54.3 NC_003521.1 + 102321 0.67 0.969047
Target:  5'- gGCAUCgUCGUcgUGCGCGU-GGGCGcCGAc -3'
miRNA:   3'- -CGUAG-AGCG--ACGCGUAgUUCGC-GCUc -5'
13966 3' -54.3 NC_003521.1 + 240628 0.67 0.962732
Target:  5'- cGCGUgUCGCU-UGCcgCGGGCGUGcAGg -3'
miRNA:   3'- -CGUAgAGCGAcGCGuaGUUCGCGC-UC- -5'
13966 3' -54.3 NC_003521.1 + 90038 0.67 0.962732
Target:  5'- gGCggCUCGCgcccGCcCGUCGucGCGCGAGc -3'
miRNA:   3'- -CGuaGAGCGa---CGcGUAGUu-CGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 79 0.67 0.962732
Target:  5'- cGCGUgUCGCU-UGCcgCGGGCGUGcAGg -3'
miRNA:   3'- -CGUAgAGCGAcGCGuaGUUCGCGC-UC- -5'
13966 3' -54.3 NC_003521.1 + 150903 0.67 0.960674
Target:  5'- gGCGUCaUCGaCUGCGCGcccuUCcacggcgugugggccGAGCGCGGu -3'
miRNA:   3'- -CGUAG-AGC-GACGCGU----AG---------------UUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 144291 0.67 0.959259
Target:  5'- gGCGaCUCGCUGCuGCcgCAcGCGCu-- -3'
miRNA:   3'- -CGUaGAGCGACG-CGuaGUuCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 125018 0.68 0.951661
Target:  5'- cGCAgCagGCUGCGCAUC---CGCGGGu -3'
miRNA:   3'- -CGUaGagCGACGCGUAGuucGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 101663 0.68 0.947527
Target:  5'- cGCGUCUCGaUGaaguugGCGUCGGGCGaGGGg -3'
miRNA:   3'- -CGUAGAGCgACg-----CGUAGUUCGCgCUC- -5'
13966 3' -54.3 NC_003521.1 + 30166 0.67 0.962732
Target:  5'- gGCGUCacgCGUUGuCGCAUgAGcGCGCGGu -3'
miRNA:   3'- -CGUAGa--GCGAC-GCGUAgUU-CGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 110639 0.69 0.915626
Target:  5'- gGCAUCUCGCcggGCGCcggcacgGUCAcggcccggucggccAGCGCGu- -3'
miRNA:   3'- -CGUAGAGCGa--CGCG-------UAGU--------------UCGCGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.