miRNA display CGI


Results 81 - 100 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 3' -54.3 NC_003521.1 + 128452 0.68 0.946243
Target:  5'- aGCG-CUCGCccagGCGgAUCAcguccaugggcagcGGCGUGAGg -3'
miRNA:   3'- -CGUaGAGCGa---CGCgUAGU--------------UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 67822 0.68 0.947527
Target:  5'- aGCAUC-CGC-GUGCAgcggCAGGaaCGCGAGa -3'
miRNA:   3'- -CGUAGaGCGaCGCGUa---GUUC--GCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 234133 0.67 0.971347
Target:  5'- aGCAgcgCUCGCggGCGCAggcccugcagcaCGAGCGgGAc -3'
miRNA:   3'- -CGUa--GAGCGa-CGCGUa-----------GUUCGCgCUc -5'
13966 3' -54.3 NC_003521.1 + 128999 0.66 0.974561
Target:  5'- aGCGUCUgcaagaaGCUGUGgAUCAGGcCGCGc- -3'
miRNA:   3'- -CGUAGAg------CGACGCgUAGUUC-GCGCuc -5'
13966 3' -54.3 NC_003521.1 + 213857 0.66 0.974561
Target:  5'- -aGUCUCGCUGCaggGCGUCcauGGCacccaagaGUGAGg -3'
miRNA:   3'- cgUAGAGCGACG---CGUAGu--UCG--------CGCUC- -5'
13966 3' -54.3 NC_003521.1 + 61455 0.66 0.974561
Target:  5'- uCAUC-CGCacGCGCGUCAAGCagGUGAc -3'
miRNA:   3'- cGUAGaGCGa-CGCGUAGUUCG--CGCUc -5'
13966 3' -54.3 NC_003521.1 + 109472 0.66 0.974561
Target:  5'- cGCGUCUgGgaacaUGCGCGcCAGGCGCu-- -3'
miRNA:   3'- -CGUAGAgCg----ACGCGUaGUUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 136089 0.66 0.974561
Target:  5'- cGCuggagggCUCGgUGUGCGUCAAGaCGgGAc -3'
miRNA:   3'- -CGua-----GAGCgACGCGUAGUUC-GCgCUc -5'
13966 3' -54.3 NC_003521.1 + 136449 0.66 0.975572
Target:  5'- ---aCUCG-UGCGuCAUCAaggucagccgcaagaAGCGCGAGg -3'
miRNA:   3'- cguaGAGCgACGC-GUAGU---------------UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 153517 0.66 0.979323
Target:  5'- gGCG-CUCGCUGCGCAccuUCuugaacacGCGCa-- -3'
miRNA:   3'- -CGUaGAGCGACGCGU---AGuu------CGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 110363 0.67 0.970213
Target:  5'- aGCAggagCGCUgGCGCGUCGucgaucgucgcccguAGUGCGAa -3'
miRNA:   3'- -CGUaga-GCGA-CGCGUAGU---------------UCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 102321 0.67 0.969047
Target:  5'- gGCAUCgUCGUcgUGCGCGU-GGGCGcCGAc -3'
miRNA:   3'- -CGUAG-AGCG--ACGCGUAgUUCGC-GCUc -5'
13966 3' -54.3 NC_003521.1 + 101663 0.68 0.947527
Target:  5'- cGCGUCUCGaUGaaguugGCGUCGGGCGaGGGg -3'
miRNA:   3'- -CGUAGAGCgACg-----CGUAGUUCGCgCUC- -5'
13966 3' -54.3 NC_003521.1 + 125018 0.68 0.951661
Target:  5'- cGCAgCagGCUGCGCAUC---CGCGGGu -3'
miRNA:   3'- -CGUaGagCGACGCGUAGuucGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 144291 0.67 0.959259
Target:  5'- gGCGaCUCGCUGCuGCcgCAcGCGCu-- -3'
miRNA:   3'- -CGUaGAGCGACG-CGuaGUuCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 150903 0.67 0.960674
Target:  5'- gGCGUCaUCGaCUGCGCGcccuUCcacggcgugugggccGAGCGCGGu -3'
miRNA:   3'- -CGUAG-AGC-GACGCGU----AG---------------UUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 30166 0.67 0.962732
Target:  5'- gGCGUCacgCGUUGuCGCAUgAGcGCGCGGu -3'
miRNA:   3'- -CGUAGa--GCGAC-GCGUAgUU-CGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 79 0.67 0.962732
Target:  5'- cGCGUgUCGCU-UGCcgCGGGCGUGcAGg -3'
miRNA:   3'- -CGUAgAGCGAcGCGuaGUUCGCGC-UC- -5'
13966 3' -54.3 NC_003521.1 + 90038 0.67 0.962732
Target:  5'- gGCggCUCGCgcccGCcCGUCGucGCGCGAGc -3'
miRNA:   3'- -CGuaGAGCGa---CGcGUAGUu-CGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 240628 0.67 0.962732
Target:  5'- cGCGUgUCGCU-UGCcgCGGGCGUGcAGg -3'
miRNA:   3'- -CGUAgAGCGAcGCGuaGUUCGCGC-UC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.