miRNA display CGI


Results 41 - 60 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 3' -52.5 NC_003521.1 + 192291 0.66 0.991322
Target:  5'- -cGCACGCCGGCGgugcagaaccugACGaCgAUGAACGg -3'
miRNA:   3'- gaCGUGCGGUCGUa-----------UGCaG-UGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 191887 0.67 0.990368
Target:  5'- aCUGgGCGgCGGCGccACGUCcuucACGGACAc -3'
miRNA:   3'- -GACgUGCgGUCGUa-UGCAG----UGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 218248 0.67 0.990368
Target:  5'- aUGUACGCCAucgcuauguGCAUGCucaaCAUGAGCGu -3'
miRNA:   3'- gACGUGCGGU---------CGUAUGca--GUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 77724 0.67 0.990368
Target:  5'- -aGCgGCGgCGGCAgu-GUCACGGGCAc -3'
miRNA:   3'- gaCG-UGCgGUCGUaugCAGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 115246 0.67 0.989599
Target:  5'- uUGUGCGCCgccguggucgggggcAGCAUGCccGUCACGGGg- -3'
miRNA:   3'- gACGUGCGG---------------UCGUAUG--CAGUGCUUgu -5'
13967 3' -52.5 NC_003521.1 + 164949 0.67 0.989061
Target:  5'- -aGC-CGCCGGCcucguCGUCACGGGg- -3'
miRNA:   3'- gaCGuGCGGUCGuau--GCAGUGCUUgu -5'
13967 3' -52.5 NC_003521.1 + 127307 0.67 0.989061
Target:  5'- -gGCGCGCCucgauguuGGCGUugGUCAgCGGc-- -3'
miRNA:   3'- gaCGUGCGG--------UCGUAugCAGU-GCUugu -5'
13967 3' -52.5 NC_003521.1 + 102844 0.67 0.989061
Target:  5'- -aGCGCGCCagggcgcccguGGCGUAgGUCugGGcCGu -3'
miRNA:   3'- gaCGUGCGG-----------UCGUAUgCAGugCUuGU- -5'
13967 3' -52.5 NC_003521.1 + 133747 0.67 0.989061
Target:  5'- aUGCugGCCGGCAggcccgGCGauucCGgGGACGc -3'
miRNA:   3'- gACGugCGGUCGUa-----UGCa---GUgCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 22592 0.67 0.989061
Target:  5'- cCUGgACGCCAuGUucuuccucaACGUCACGGAUg -3'
miRNA:   3'- -GACgUGCGGU-CGua-------UGCAGUGCUUGu -5'
13967 3' -52.5 NC_003521.1 + 65889 0.67 0.989061
Target:  5'- -cGCGCGUCAGCu--CcUCGCGGGCc -3'
miRNA:   3'- gaCGUGCGGUCGuauGcAGUGCUUGu -5'
13967 3' -52.5 NC_003521.1 + 122886 0.67 0.989061
Target:  5'- gCUGUugaGCGCCgAGCcgACG-CAgGAACAa -3'
miRNA:   3'- -GACG---UGCGG-UCGuaUGCaGUgCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 220528 0.67 0.989061
Target:  5'- -aGCACcCCAGCA-ACGUgACGGugAu -3'
miRNA:   3'- gaCGUGcGGUCGUaUGCAgUGCUugU- -5'
13967 3' -52.5 NC_003521.1 + 121597 0.67 0.988923
Target:  5'- -cGCACGUCAuGCuggACGUggccuucaccuccCACGAACAc -3'
miRNA:   3'- gaCGUGCGGU-CGua-UGCA-------------GUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 34847 0.67 0.988923
Target:  5'- -cGCGCGCCuGCAgcccgGCGUCAgccuggugcacccCGAccACAa -3'
miRNA:   3'- gaCGUGCGGuCGUa----UGCAGU-------------GCU--UGU- -5'
13967 3' -52.5 NC_003521.1 + 101773 0.67 0.988214
Target:  5'- cCUGCugGUCGGCc-GCGUCuggccgccgcugcuCGAGCAc -3'
miRNA:   3'- -GACGugCGGUCGuaUGCAGu-------------GCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 69675 0.67 0.987621
Target:  5'- gUGCGCGCCGucaccgucccGCGUcugcugcgucucACGUggCACGGACAc -3'
miRNA:   3'- gACGUGCGGU----------CGUA------------UGCA--GUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 122964 0.67 0.987621
Target:  5'- gUGCGggguaGCCAGac--CGUCACGGGCAu -3'
miRNA:   3'- gACGUg----CGGUCguauGCAGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 34696 0.67 0.987621
Target:  5'- cCUGCGCGUCguaggcgaagacGGCGccgugcGCGUCcACGAACAc -3'
miRNA:   3'- -GACGUGCGG------------UCGUa-----UGCAG-UGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 117007 0.67 0.986038
Target:  5'- -aGCugGUCGGCGUgACGgagCGCGAGu- -3'
miRNA:   3'- gaCGugCGGUCGUA-UGCa--GUGCUUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.