miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 5' -55.3 NC_003521.1 + 102654 0.69 0.908667
Target:  5'- cGUGaaGCG-GCUGUCgGGC-ACGUGCu -3'
miRNA:   3'- aCAUg-CGUaCGACAGgCCGcUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 49111 0.69 0.908667
Target:  5'- aGUGCGCGUGgUGaCCG-CGGCGccgcUGCu -3'
miRNA:   3'- aCAUGCGUACgACaGGCcGCUGC----ACG- -5'
13967 5' -55.3 NC_003521.1 + 45913 0.69 0.911015
Target:  5'- gUGUGCGCcgGaccccgcggagCCGGCGGCGgugGCc -3'
miRNA:   3'- -ACAUGCGuaCgaca-------GGCCGCUGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 143538 0.68 0.914471
Target:  5'- --cACGCGcGCcG-CCGGCGACGaGCa -3'
miRNA:   3'- acaUGCGUaCGaCaGGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 145853 0.68 0.920051
Target:  5'- --aACGCGUcuCUGggcCCGGCGGCGgGCg -3'
miRNA:   3'- acaUGCGUAc-GACa--GGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 124029 0.68 0.920051
Target:  5'- gGUGCGuCAgcgGCUGcUUGGCGuuGUGCu -3'
miRNA:   3'- aCAUGC-GUa--CGACaGGCCGCugCACG- -5'
13967 5' -55.3 NC_003521.1 + 85499 0.68 0.920051
Target:  5'- uUGcGCGCcgGCcccaugucucUGUCCGGCG-CG-GCg -3'
miRNA:   3'- -ACaUGCGuaCG----------ACAGGCCGCuGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 32097 0.68 0.920051
Target:  5'- --aGCGcCAUGC-GUuuGGCGGCGcgGCu -3'
miRNA:   3'- acaUGC-GUACGaCAggCCGCUGCa-CG- -5'
13967 5' -55.3 NC_003521.1 + 149756 0.68 0.920051
Target:  5'- aGUcGCGCAgcgGCgucUGUCCGGCGAagccGCg -3'
miRNA:   3'- aCA-UGCGUa--CG---ACAGGCCGCUgca-CG- -5'
13967 5' -55.3 NC_003521.1 + 53954 0.68 0.920051
Target:  5'- cGUAC-CGUGUauaacuaacaUGcCCGGCGGCG-GCa -3'
miRNA:   3'- aCAUGcGUACG----------ACaGGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 201947 0.68 0.925404
Target:  5'- aUGccCGUGUGCUGccaCCGGCGGCGcaGCu -3'
miRNA:   3'- -ACauGCGUACGACa--GGCCGCUGCa-CG- -5'
13967 5' -55.3 NC_003521.1 + 216606 0.68 0.925404
Target:  5'- --aGCGCGUGCUGgaucuaCUGGCGcuACGaGCg -3'
miRNA:   3'- acaUGCGUACGACa-----GGCCGC--UGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 239369 0.68 0.925404
Target:  5'- aUGccCGUGUGCUGccaCCGGCGGCGcaGCu -3'
miRNA:   3'- -ACauGCGUACGACa--GGCCGCUGCa-CG- -5'
13967 5' -55.3 NC_003521.1 + 138911 0.68 0.925404
Target:  5'- aGUACGCcgGCucggUGUCggaccaCGGCGGC-UGCu -3'
miRNA:   3'- aCAUGCGuaCG----ACAG------GCCGCUGcACG- -5'
13967 5' -55.3 NC_003521.1 + 233604 0.68 0.925404
Target:  5'- --gGCGcCAUGaucUCCGGCGGgGUGCu -3'
miRNA:   3'- acaUGC-GUACgacAGGCCGCUgCACG- -5'
13967 5' -55.3 NC_003521.1 + 118029 0.68 0.930532
Target:  5'- --cAUGC-UGCUGggaCGGCGGCG-GCg -3'
miRNA:   3'- acaUGCGuACGACag-GCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 228736 0.68 0.930532
Target:  5'- gGgcUGCGUGgUGagCaGCGGCGUGCg -3'
miRNA:   3'- aCauGCGUACgACagGcCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 201533 0.68 0.935433
Target:  5'- gGUucCGCuacgGCg--CCGGCGACGUGg -3'
miRNA:   3'- aCAu-GCGua--CGacaGGCCGCUGCACg -5'
13967 5' -55.3 NC_003521.1 + 239783 0.68 0.935433
Target:  5'- gGUucCGCuacgGCg--CCGGCGACGUGg -3'
miRNA:   3'- aCAu-GCGua--CGacaGGCCGCUGCACg -5'
13967 5' -55.3 NC_003521.1 + 167006 0.68 0.935433
Target:  5'- aGUugGCGUagaagguccgGUUG-CCGGCGACGaUGa -3'
miRNA:   3'- aCAugCGUA----------CGACaGGCCGCUGC-ACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.