miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 5' -55.3 NC_003521.1 + 224679 0.69 0.896391
Target:  5'- --cACGCAgcgcCUGgCCGGCGAgGUGUa -3'
miRNA:   3'- acaUGCGUac--GACaGGCCGCUgCACG- -5'
13967 5' -55.3 NC_003521.1 + 153366 0.69 0.90264
Target:  5'- cGU-CGCGcGCgc-CCGGCGGCGUGg -3'
miRNA:   3'- aCAuGCGUaCGacaGGCCGCUGCACg -5'
13967 5' -55.3 NC_003521.1 + 75519 0.69 0.904471
Target:  5'- aUGUGCagccggcccuccucgGCGUGCaugaagggcacgaUGUCgugguUGGCGGCGUGCa -3'
miRNA:   3'- -ACAUG---------------CGUACG-------------ACAG-----GCCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 154735 0.69 0.908074
Target:  5'- --gGCGCcgGCgGUgCCGGUGaccaacaGCGUGCg -3'
miRNA:   3'- acaUGCGuaCGaCA-GGCCGC-------UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 45913 0.69 0.911015
Target:  5'- gUGUGCGCcgGaccccgcggagCCGGCGGCGgugGCc -3'
miRNA:   3'- -ACAUGCGuaCgaca-------GGCCGCUGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 201849 0.7 0.838903
Target:  5'- cUGUGCuGCGggugGCUGUUUcugGGCGuCGUGCu -3'
miRNA:   3'- -ACAUG-CGUa---CGACAGG---CCGCuGCACG- -5'
13967 5' -55.3 NC_003521.1 + 138453 0.7 0.845995
Target:  5'- --cGCGCGUGCaucgCCGGCGGCGccacaucUGCc -3'
miRNA:   3'- acaUGCGUACGaca-GGCCGCUGC-------ACG- -5'
13967 5' -55.3 NC_003521.1 + 115363 0.7 0.846774
Target:  5'- gGUcACGCGUcGCUGgccagggCCGGC-AUGUGCa -3'
miRNA:   3'- aCA-UGCGUA-CGACa------GGCCGcUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 116089 0.7 0.846774
Target:  5'- aGUGCaGCG-GCUGUCCGcGCGACa--- -3'
miRNA:   3'- aCAUG-CGUaCGACAGGC-CGCUGcacg -5'
13967 5' -55.3 NC_003521.1 + 160773 0.7 0.846774
Target:  5'- --cGCGCGUGCcG-CCGGCGGCacGCg -3'
miRNA:   3'- acaUGCGUACGaCaGGCCGCUGcaCG- -5'
13967 5' -55.3 NC_003521.1 + 118743 0.7 0.85446
Target:  5'- gGgcUGCAgguUGCUGgugagUCGGCGGcCGUGCg -3'
miRNA:   3'- aCauGCGU---ACGACa----GGCCGCU-GCACG- -5'
13967 5' -55.3 NC_003521.1 + 223837 0.7 0.869255
Target:  5'- --gGCGCcUGCUGUCCcuGCGGC-UGCu -3'
miRNA:   3'- acaUGCGuACGACAGGc-CGCUGcACG- -5'
13967 5' -55.3 NC_003521.1 + 239466 0.7 0.838903
Target:  5'- cUGUGCuGCGggugGCUGUUUcugGGCGuCGUGCu -3'
miRNA:   3'- -ACAUG-CGUa---CGACAGG---CCGCuGCACG- -5'
13967 5' -55.3 NC_003521.1 + 155496 0.7 0.838903
Target:  5'- gGgcCGCAcgaaGCgGUCCacguaGGCGACGUGCu -3'
miRNA:   3'- aCauGCGUa---CGaCAGG-----CCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 135740 0.7 0.838903
Target:  5'- aUGUGCGCGccacUGC-GUCCGcGuCGACGggggGCg -3'
miRNA:   3'- -ACAUGCGU----ACGaCAGGC-C-GCUGCa---CG- -5'
13967 5' -55.3 NC_003521.1 + 85940 0.7 0.846774
Target:  5'- --gGCGCGUGCUGgacgCCGGCucggaacagcuGGCGgccGCg -3'
miRNA:   3'- acaUGCGUACGACa---GGCCG-----------CUGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 191256 0.7 0.846774
Target:  5'- aGUGCGcCGUGCagacggccGUCCaGGUGGCgGUGCa -3'
miRNA:   3'- aCAUGC-GUACGa-------CAGG-CCGCUG-CACG- -5'
13967 5' -55.3 NC_003521.1 + 207175 0.7 0.849871
Target:  5'- gGUcaACGCggugaucuucacaugGUGCUG-CUGuGCGGCGUGCg -3'
miRNA:   3'- aCA--UGCG---------------UACGACaGGC-CGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 220334 0.7 0.868534
Target:  5'- gUGUACGCgcugcugGUGCUGUCCuuccuGGCGuuG-GCg -3'
miRNA:   3'- -ACAUGCG-------UACGACAGG-----CCGCugCaCG- -5'
13967 5' -55.3 NC_003521.1 + 103576 0.7 0.869255
Target:  5'- cGUcaGCGCcUGCUGgaguaCCGGCG-CGUGg -3'
miRNA:   3'- aCA--UGCGuACGACa----GGCCGCuGCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.