miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 5' -55.3 NC_003521.1 + 115382 0.68 0.935433
Target:  5'- gUGgagACGCcgGCgGUCacgacgggggCGGCGACG-GCg -3'
miRNA:   3'- -ACa--UGCGuaCGaCAG----------GCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 45787 0.68 0.935433
Target:  5'- --gGCGCccGCUccaaGUCCaugcggcucgacGGCGACGUGUa -3'
miRNA:   3'- acaUGCGuaCGA----CAGG------------CCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 59850 0.67 0.940109
Target:  5'- --cACGCAcuauggGCcgGUCaaCGGCGAUGUGCc -3'
miRNA:   3'- acaUGCGUa-----CGa-CAG--GCCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 240063 0.67 0.940109
Target:  5'- --gGCGCcUGCUuggccUCCGGCGugGgGCu -3'
miRNA:   3'- acaUGCGuACGAc----AGGCCGCugCaCG- -5'
13967 5' -55.3 NC_003521.1 + 147975 0.67 0.940109
Target:  5'- cGUGCGCAcgggucacauggUGCUGgCCGuguuCGugGUGUa -3'
miRNA:   3'- aCAUGCGU------------ACGACaGGCc---GCugCACG- -5'
13967 5' -55.3 NC_003521.1 + 201252 0.67 0.940109
Target:  5'- --gGCGCcUGCUuggccUCCGGCGugGgGCu -3'
miRNA:   3'- acaUGCGuACGAc----AGGCCGCugCaCG- -5'
13967 5' -55.3 NC_003521.1 + 85586 0.67 0.944561
Target:  5'- gGgcCGCGggccaagGCUGgagcgaCGGCGACGUGg -3'
miRNA:   3'- aCauGCGUa------CGACag----GCCGCUGCACg -5'
13967 5' -55.3 NC_003521.1 + 129623 0.67 0.94879
Target:  5'- aGU-CGCcgGCcGcCCGGCGG-GUGCu -3'
miRNA:   3'- aCAuGCGuaCGaCaGGCCGCUgCACG- -5'
13967 5' -55.3 NC_003521.1 + 42296 0.67 0.94879
Target:  5'- gGUAgcagcUGCGUGgUG-CCGGCGGCGUc- -3'
miRNA:   3'- aCAU-----GCGUACgACaGGCCGCUGCAcg -5'
13967 5' -55.3 NC_003521.1 + 200529 0.67 0.952408
Target:  5'- gUGUGCGUccaccgGUCUGGCGuccccagGCGUGCa -3'
miRNA:   3'- -ACAUGCGuacga-CAGGCCGC-------UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 240787 0.67 0.952408
Target:  5'- gUGUGCGUccaccgGUCUGGCGuccccagGCGUGCa -3'
miRNA:   3'- -ACAUGCGuacga-CAGGCCGC-------UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 146176 0.67 0.9528
Target:  5'- gGgcCGCGaguUGCUGgCCGGCgGACG-GCc -3'
miRNA:   3'- aCauGCGU---ACGACaGGCCG-CUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 138854 0.67 0.9528
Target:  5'- cGUAC--AUGgUGUCCGGCGAgaUGCc -3'
miRNA:   3'- aCAUGcgUACgACAGGCCGCUgcACG- -5'
13967 5' -55.3 NC_003521.1 + 143826 0.67 0.956593
Target:  5'- cGUGCccgccagcgaugGCGgcUGCUGcucgucgCCGGCGGCGcGCg -3'
miRNA:   3'- aCAUG------------CGU--ACGACa------GGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 68802 0.67 0.956593
Target:  5'- aGUugGCGgccGCUgccgccGUCCGGUGuCGgugGCg -3'
miRNA:   3'- aCAugCGUa--CGA------CAGGCCGCuGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 73179 0.67 0.960172
Target:  5'- cUGgACGCGgaGCUGgCCGGCaucGACGUGa -3'
miRNA:   3'- -ACaUGCGUa-CGACaGGCCG---CUGCACg -5'
13967 5' -55.3 NC_003521.1 + 163815 0.67 0.960172
Target:  5'- ---cCGCAUGCUGcccCUGGaCGGCG-GCg -3'
miRNA:   3'- acauGCGUACGACa--GGCC-GCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 137960 0.66 0.963543
Target:  5'- --aGCGCGUGUgguaugCCGaCGugGUGCg -3'
miRNA:   3'- acaUGCGUACGaca---GGCcGCugCACG- -5'
13967 5' -55.3 NC_003521.1 + 32567 0.66 0.963543
Target:  5'- cGUGCGCcgcaGCUGUCUGGCccauuCG-GCc -3'
miRNA:   3'- aCAUGCGua--CGACAGGCCGcu---GCaCG- -5'
13967 5' -55.3 NC_003521.1 + 62835 0.66 0.966402
Target:  5'- gGUAgGCGgcggcguUGCUG-CauuGCGACGUGCg -3'
miRNA:   3'- aCAUgCGU-------ACGACaGgc-CGCUGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.