miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 5' -55.3 NC_003521.1 + 143826 0.67 0.956593
Target:  5'- cGUGCccgccagcgaugGCGgcUGCUGcucgucgCCGGCGGCGcGCg -3'
miRNA:   3'- aCAUG------------CGU--ACGACa------GGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 145853 0.68 0.920051
Target:  5'- --aACGCGUcuCUGggcCCGGCGGCGgGCg -3'
miRNA:   3'- acaUGCGUAc-GACa--GGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 146176 0.67 0.9528
Target:  5'- gGgcCGCGaguUGCUGgCCGGCgGACG-GCc -3'
miRNA:   3'- aCauGCGU---ACGACaGGCCG-CUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 147975 0.67 0.940109
Target:  5'- cGUGCGCAcgggucacauggUGCUGgCCGuguuCGugGUGUa -3'
miRNA:   3'- aCAUGCGU------------ACGACaGGCc---GCugCACG- -5'
13967 5' -55.3 NC_003521.1 + 148385 0.73 0.713469
Target:  5'- gGUGCGCGUGUUGaCgCGGuCcACGUGCg -3'
miRNA:   3'- aCAUGCGUACGACaG-GCC-GcUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 149618 0.71 0.814252
Target:  5'- -aUGCGCGaaacggcGCUGgacgccgCCGGCGAgGUGCu -3'
miRNA:   3'- acAUGCGUa------CGACa------GGCCGCUgCACG- -5'
13967 5' -55.3 NC_003521.1 + 149756 0.68 0.920051
Target:  5'- aGUcGCGCAgcgGCgucUGUCCGGCGAagccGCg -3'
miRNA:   3'- aCA-UGCGUa--CG---ACAGGCCGCUgca-CG- -5'
13967 5' -55.3 NC_003521.1 + 150559 0.71 0.814252
Target:  5'- gGUGCGgGUGgUGg-CGGCGGCGgcgGCg -3'
miRNA:   3'- aCAUGCgUACgACagGCCGCUGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 150651 0.76 0.536008
Target:  5'- cGUGCGCGacgaaggcgGCUcUCCGGCGGCG-GCg -3'
miRNA:   3'- aCAUGCGUa--------CGAcAGGCCGCUGCaCG- -5'
13967 5' -55.3 NC_003521.1 + 150694 0.69 0.889925
Target:  5'- cUGggUGC-UGCUGcgCCGGCGGCGacugGCu -3'
miRNA:   3'- -ACauGCGuACGACa-GGCCGCUGCa---CG- -5'
13967 5' -55.3 NC_003521.1 + 151433 0.75 0.594763
Target:  5'- cGUGCGCGUGCguaccGUgCGGCGACagGUGa -3'
miRNA:   3'- aCAUGCGUACGa----CAgGCCGCUG--CACg -5'
13967 5' -55.3 NC_003521.1 + 151792 0.66 0.966709
Target:  5'- gGUACaGCAUGaaGguggCCGGC-ACGUGUu -3'
miRNA:   3'- aCAUG-CGUACgaCa---GGCCGcUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 152902 0.66 0.977439
Target:  5'- cGUgcACGCgGUGCUcccagGUCUGGUucaGCGUGCg -3'
miRNA:   3'- aCA--UGCG-UACGA-----CAGGCCGc--UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 153366 0.69 0.90264
Target:  5'- cGU-CGCGcGCgc-CCGGCGGCGUGg -3'
miRNA:   3'- aCAuGCGUaCGacaGGCCGCUGCACg -5'
13967 5' -55.3 NC_003521.1 + 154735 0.69 0.908074
Target:  5'- --gGCGCcgGCgGUgCCGGUGaccaacaGCGUGCg -3'
miRNA:   3'- acaUGCGuaCGaCA-GGCCGC-------UGCACG- -5'
13967 5' -55.3 NC_003521.1 + 155496 0.7 0.838903
Target:  5'- gGgcCGCAcgaaGCgGUCCacguaGGCGACGUGCu -3'
miRNA:   3'- aCauGCGUa---CGaCAGG-----CCGCUGCACG- -5'
13967 5' -55.3 NC_003521.1 + 155653 0.66 0.972449
Target:  5'- --aGCGcCGUGCUGggUGGCGGCGgagGUc -3'
miRNA:   3'- acaUGC-GUACGACagGCCGCUGCa--CG- -5'
13967 5' -55.3 NC_003521.1 + 160773 0.7 0.846774
Target:  5'- --cGCGCGUGCcG-CCGGCGGCacGCg -3'
miRNA:   3'- acaUGCGUACGaCaGGCCGCUGcaCG- -5'
13967 5' -55.3 NC_003521.1 + 161038 0.66 0.977439
Target:  5'- ---cCGCGUGCcG-CCGGCGGCacGCg -3'
miRNA:   3'- acauGCGUACGaCaGGCCGCUGcaCG- -5'
13967 5' -55.3 NC_003521.1 + 163815 0.67 0.960172
Target:  5'- ---cCGCAUGCUGcccCUGGaCGGCG-GCg -3'
miRNA:   3'- acauGCGUACGACa--GGCC-GCUGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.