miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 105850 0.67 0.940116
Target:  5'- gCUGCGCCggcGGcGGcgacgacacgGCGGCgGACGCCg -3'
miRNA:   3'- -GACGCGGa--CCuCU----------UGUUGgCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 129798 0.67 0.944149
Target:  5'- -aGCGCCgccgcgaUGGAGAACuggUCGGCGCUc -3'
miRNA:   3'- gaCGCGG-------ACCUCUUGuu-GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 211666 0.67 0.944586
Target:  5'- gUGCGCC-GGcugcuGCAcgagaGCCGGCGCCUg -3'
miRNA:   3'- gACGCGGaCCucu--UGU-----UGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 73503 0.67 0.948832
Target:  5'- -aGCGCgugucgaUGGAGAGCGGCgcgcagaGGCGCCg -3'
miRNA:   3'- gaCGCGg------ACCUCUUGUUGg------CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 110146 0.67 0.948832
Target:  5'- -cGCGCCgUGGAGAugGcacgcaagGCCuuCACCg -3'
miRNA:   3'- gaCGCGG-ACCUCUugU--------UGGcuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 84957 0.67 0.94716
Target:  5'- -gGCcgGCCUGGAGGugugcacGCAGCugcuggcgcugcugCGACGCCUg -3'
miRNA:   3'- gaCG--CGGACCUCU-------UGUUG--------------GCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 102333 0.67 0.940116
Target:  5'- gUGCGCgUGGGc----GCCGACGCCg -3'
miRNA:   3'- gACGCGgACCUcuuguUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 29445 0.67 0.940116
Target:  5'- -aGCGCgUGGGccaguucauGAuccGCGACCGGCugCUg -3'
miRNA:   3'- gaCGCGgACCU---------CU---UGUUGGCUGugGA- -5'
13968 3' -55.5 NC_003521.1 + 195405 0.67 0.940116
Target:  5'- -cGCGCCgacGGcGGGC-ACCGGCuACCUg -3'
miRNA:   3'- gaCGCGGa--CCuCUUGuUGGCUG-UGGA- -5'
13968 3' -55.5 NC_003521.1 + 130771 0.67 0.942825
Target:  5'- -cGCGCCgGGGGAGCAGaaagggaagaagaCGGcCACCa -3'
miRNA:   3'- gaCGCGGaCCUCUUGUUg------------GCU-GUGGa -5'
13968 3' -55.5 NC_003521.1 + 124186 0.67 0.944149
Target:  5'- gUGCGCCugccggcUGGGGGugAGCgGGC-CCUu -3'
miRNA:   3'- gACGCGG-------ACCUCUugUUGgCUGuGGA- -5'
13968 3' -55.5 NC_003521.1 + 145800 0.67 0.944586
Target:  5'- -aGCGCUcGGAGGugAucgucuUCGACGCCa -3'
miRNA:   3'- gaCGCGGaCCUCUugUu-----GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 168245 0.67 0.952856
Target:  5'- -aGCGCCUGGAacGCGuuGCCG-CACg- -3'
miRNA:   3'- gaCGCGGACCUcuUGU--UGGCuGUGga -5'
13968 3' -55.5 NC_003521.1 + 215324 0.67 0.948832
Target:  5'- -aGCGUgUaGaAGAGCAgcACCGACACCUu -3'
miRNA:   3'- gaCGCGgAcC-UCUUGU--UGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 137882 0.67 0.948832
Target:  5'- -aGCGCCUGGAccGCGACgccuCGGC-CCUc -3'
miRNA:   3'- gaCGCGGACCUcuUGUUG----GCUGuGGA- -5'
13968 3' -55.5 NC_003521.1 + 154709 0.67 0.944586
Target:  5'- -cGCGCgaGGAGAACAccauccAgCGGCugCa -3'
miRNA:   3'- gaCGCGgaCCUCUUGU------UgGCUGugGa -5'
13968 3' -55.5 NC_003521.1 + 45268 0.67 0.948832
Target:  5'- -aGCGCuucCUGGAGaucAugGACCGgGCGCCg -3'
miRNA:   3'- gaCGCG---GACCUC---UugUUGGC-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 78830 0.68 0.925345
Target:  5'- -gGCGUCaacgGGGGuGCGacACCGGCGCCg -3'
miRNA:   3'- gaCGCGGa---CCUCuUGU--UGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 240388 0.68 0.914358
Target:  5'- -cGCGCCcgccGGGACGACCGcACGCCc -3'
miRNA:   3'- gaCGCGGacc-UCUUGUUGGC-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 103572 0.68 0.919966
Target:  5'- -aGCGCCUGcuGGAguACCGGCGCg- -3'
miRNA:   3'- gaCGCGGACcuCUUguUGGCUGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.