miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 17464 0.69 0.889682
Target:  5'- -aGCGCUcGGAGGAgAGacgaCGGCACCg -3'
miRNA:   3'- gaCGCGGaCCUCUUgUUg---GCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 128069 0.69 0.896184
Target:  5'- -cGCGCCUGGcagaucauGGAGCAcgugcggcuacgGCCGcCGCCc -3'
miRNA:   3'- gaCGCGGACC--------UCUUGU------------UGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 216471 0.69 0.896184
Target:  5'- gUGUGCCaGGAGGACc-CCG-CGCCg -3'
miRNA:   3'- gACGCGGaCCUCUUGuuGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 59164 0.69 0.876034
Target:  5'- cCUGCGCaUGGAGAcgggcuGCGACuCGccGCGCCa -3'
miRNA:   3'- -GACGCGgACCUCU------UGUUG-GC--UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 181366 0.69 0.861555
Target:  5'- -cGCGCCcGGAucGGACAGCCuguaGCGCCa -3'
miRNA:   3'- gaCGCGGaCCU--CUUGUUGGc---UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 153229 0.69 0.896184
Target:  5'- -aGUGCCUGGAGGAgcaGAUCGAgGCg- -3'
miRNA:   3'- gaCGCGGACCUCUUg--UUGGCUgUGga -5'
13968 3' -55.5 NC_003521.1 + 96254 0.69 0.889682
Target:  5'- -aGCGCCgcgGGAGAcgACAGCgGAgAUCg -3'
miRNA:   3'- gaCGCGGa--CCUCU--UGUUGgCUgUGGa -5'
13968 3' -55.5 NC_003521.1 + 232404 0.69 0.889682
Target:  5'- gCUGCGCCUGcGGcacGGCAacGCCaGCGCCUg -3'
miRNA:   3'- -GACGCGGACcUC---UUGU--UGGcUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 16573 0.69 0.861555
Target:  5'- gCUGCGCCUGcGAG-GCGACCGGgGa-- -3'
miRNA:   3'- -GACGCGGAC-CUCuUGUUGGCUgUgga -5'
13968 3' -55.5 NC_003521.1 + 141737 0.69 0.882964
Target:  5'- -cGCGCCcGGAGaAGCGGCUucGCACCa -3'
miRNA:   3'- gaCGCGGaCCUC-UUGUUGGc-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 5685 0.69 0.868896
Target:  5'- -gGCGCCcguccgcGGGGAACGggcGCCGuCACCg -3'
miRNA:   3'- gaCGCGGa------CCUCUUGU---UGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 120376 0.69 0.876034
Target:  5'- gCUGUGCCUcuuccaGGAGAACAAaucgcagcaCGACACg- -3'
miRNA:   3'- -GACGCGGA------CCUCUUGUUg--------GCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 116086 0.69 0.861555
Target:  5'- -aGCGCCUGcuGAGCcACCcGCGCCUg -3'
miRNA:   3'- gaCGCGGACcuCUUGuUGGcUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 211197 0.69 0.882964
Target:  5'- uUGCaCCUGGGcGAcgACGACCGACgACCc -3'
miRNA:   3'- gACGcGGACCU-CU--UGUUGGCUG-UGGa -5'
13968 3' -55.5 NC_003521.1 + 28840 0.69 0.861555
Target:  5'- -gGCGCCUGGAcGAcgagcugcgGCGGCgCGGCACg- -3'
miRNA:   3'- gaCGCGGACCU-CU---------UGUUG-GCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 22988 0.69 0.861555
Target:  5'- uCUGCGCCUGGuuGACGgugauAgCGGCAUCc -3'
miRNA:   3'- -GACGCGGACCucUUGU-----UgGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 26088 0.69 0.876034
Target:  5'- aCUGUacGCCUGGAGcgaacuguACGGCUGGCAgCUg -3'
miRNA:   3'- -GACG--CGGACCUCu-------UGUUGGCUGUgGA- -5'
13968 3' -55.5 NC_003521.1 + 36846 0.68 0.925345
Target:  5'- gCUGUGCCgGGuAGAGCAcCUGACguggGCCg -3'
miRNA:   3'- -GACGCGGaCC-UCUUGUuGGCUG----UGGa -5'
13968 3' -55.5 NC_003521.1 + 63887 0.68 0.908524
Target:  5'- -cGCGCCgGGAGcuGCAGCaguugGGCACCc -3'
miRNA:   3'- gaCGCGGaCCUCu-UGUUGg----CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 74191 0.68 0.902465
Target:  5'- -gGCGCCcGGcGcGCGGcCCGACGCCg -3'
miRNA:   3'- gaCGCGGaCCuCuUGUU-GGCUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.