miRNA display CGI


Results 121 - 140 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 73503 0.67 0.948832
Target:  5'- -aGCGCgugucgaUGGAGAGCGGCgcgcagaGGCGCCg -3'
miRNA:   3'- gaCGCGg------ACCUCUUGUUGg------CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 142703 0.67 0.948832
Target:  5'- -cGUGCCUGaAGAcGCugguGCCGACGCUg -3'
miRNA:   3'- gaCGCGGACcUCU-UGu---UGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 222516 0.67 0.948832
Target:  5'- -cGCGCagCUGGAGAGCGcGCuCGACugguuCCUg -3'
miRNA:   3'- gaCGCG--GACCUCUUGU-UG-GCUGu----GGA- -5'
13968 3' -55.5 NC_003521.1 + 45268 0.67 0.948832
Target:  5'- -aGCGCuucCUGGAGaucAugGACCGgGCGCCg -3'
miRNA:   3'- gaCGCG---GACCUC---UugUUGGC-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 137882 0.67 0.948832
Target:  5'- -aGCGCCUGGAccGCGACgccuCGGC-CCUc -3'
miRNA:   3'- gaCGCGGACCUcuUGUUG----GCUGuGGA- -5'
13968 3' -55.5 NC_003521.1 + 110146 0.67 0.948832
Target:  5'- -cGCGCCgUGGAGAugGcacgcaagGCCuuCACCg -3'
miRNA:   3'- gaCGCGG-ACCUCUugU--------UGGcuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 215324 0.67 0.948832
Target:  5'- -aGCGUgUaGaAGAGCAgcACCGACACCUu -3'
miRNA:   3'- gaCGCGgAcC-UCUUGU--UGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 46369 0.67 0.952463
Target:  5'- gCUGCGUCcGGAG-GCGGCgcuacaaggucugCGACGCCg -3'
miRNA:   3'- -GACGCGGaCCUCuUGUUG-------------GCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 28020 0.67 0.952856
Target:  5'- gCUGCGCCgucgGGAcGACAuCgCGGCGCUc -3'
miRNA:   3'- -GACGCGGa---CCUcUUGUuG-GCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 226935 0.67 0.952856
Target:  5'- uUGCGCCUaGAGGACGagaucAUCGucaGCGCCa -3'
miRNA:   3'- gACGCGGAcCUCUUGU-----UGGC---UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 226972 0.67 0.952856
Target:  5'- cCUGUGUCUGGGuccgccGAAgGGCUGGCACg- -3'
miRNA:   3'- -GACGCGGACCU------CUUgUUGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 153704 0.67 0.952856
Target:  5'- gCUG-GCCUacGAGcGCGACCGGCugCUg -3'
miRNA:   3'- -GACgCGGAc-CUCuUGUUGGCUGugGA- -5'
13968 3' -55.5 NC_003521.1 + 7743 0.67 0.952856
Target:  5'- uUGCGCCUGGAucgccGGACuGCUGAuCAUUg -3'
miRNA:   3'- gACGCGGACCU-----CUUGuUGGCU-GUGGa -5'
13968 3' -55.5 NC_003521.1 + 211108 0.67 0.952856
Target:  5'- -cGCGCCgaGGcucAGCAGCCaGGCGCCg -3'
miRNA:   3'- gaCGCGGa-CCuc-UUGUUGG-CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 168245 0.67 0.952856
Target:  5'- -aGCGCCUGGAacGCGuuGCCG-CACg- -3'
miRNA:   3'- gaCGCGGACCUcuUGU--UGGCuGUGga -5'
13968 3' -55.5 NC_003521.1 + 56932 0.67 0.952856
Target:  5'- aCUGCGaCCUGGugcgcGAGCGggaggugcACCGGC-CCg -3'
miRNA:   3'- -GACGC-GGACCu----CUUGU--------UGGCUGuGGa -5'
13968 3' -55.5 NC_003521.1 + 168362 0.66 0.956291
Target:  5'- -gGCGCgugUUGGAGGGCAuCCGACcggugguGCCg -3'
miRNA:   3'- gaCGCG---GACCUCUUGUuGGCUG-------UGGa -5'
13968 3' -55.5 NC_003521.1 + 128128 0.66 0.956291
Target:  5'- -cGCGCaucCUGGuGGGCAACCugcccgacgggcuGGCGCCg -3'
miRNA:   3'- gaCGCG---GACCuCUUGUUGG-------------CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 228372 0.66 0.956291
Target:  5'- gCUGCuacgcgcgcaacaGCCUGGAcGAGguuuCCGGCGCCUc -3'
miRNA:   3'- -GACG-------------CGGACCU-CUUguu-GGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 168241 0.66 0.956291
Target:  5'- gUGCGCCUGGuGGucgaaaaGCAGCCaGACGu-- -3'
miRNA:   3'- gACGCGGACCuCU-------UGUUGG-CUGUgga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.