miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 39564 0.68 0.925345
Target:  5'- aUGCuGCCUGG-GAGaGugUGACGCCg -3'
miRNA:   3'- gACG-CGGACCuCUUgUugGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 39860 0.68 0.919966
Target:  5'- -cGcCGCCacccagGGcAGGACcGCCGACGCCg -3'
miRNA:   3'- gaC-GCGGa-----CC-UCUUGuUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 103572 0.68 0.919966
Target:  5'- -aGCGCCUGcuGGAguACCGGCGCg- -3'
miRNA:   3'- gaCGCGGACcuCUUguUGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 113692 0.68 0.919966
Target:  5'- uCUGCGCCgccUGGAGGu--GCaCGACGCgCUg -3'
miRNA:   3'- -GACGCGG---ACCUCUuguUG-GCUGUG-GA- -5'
13968 3' -55.5 NC_003521.1 + 101829 0.68 0.919966
Target:  5'- -cGCGCggagcgGGGGGACGA-CGACGCCg -3'
miRNA:   3'- gaCGCGga----CCUCUUGUUgGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 38233 0.68 0.914358
Target:  5'- -gGgGCCgaGGAGAGC-AUUGACGCCg -3'
miRNA:   3'- gaCgCGGa-CCUCUUGuUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 240388 0.68 0.914358
Target:  5'- -cGCGCCcgccGGGACGACCGcACGCCc -3'
miRNA:   3'- gaCGCGGacc-UCUUGUUGGC-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 200927 0.68 0.914358
Target:  5'- -cGCGCCcgccGGGACGACCGcACGCCc -3'
miRNA:   3'- gaCGCGGacc-UCUUGUUGGC-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 120501 0.68 0.912052
Target:  5'- -cGCGUgUGGGGGACGACguggcuuuuuauaGACACCc -3'
miRNA:   3'- gaCGCGgACCUCUUGUUGg------------CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 63887 0.68 0.908524
Target:  5'- -cGCGCCgGGAGcuGCAGCaguugGGCACCc -3'
miRNA:   3'- gaCGCGGaCCUCu-UGUUGg----CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 25650 0.68 0.908524
Target:  5'- -cGgGUCUGG-GAGCAGgguguCCGGCGCCg -3'
miRNA:   3'- gaCgCGGACCuCUUGUU-----GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 91108 0.68 0.908524
Target:  5'- cCUGCGCCggucGGGGAuuccCCGGCAUCc -3'
miRNA:   3'- -GACGCGGa---CCUCUuguuGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 26526 0.68 0.908524
Target:  5'- -gGUGCCUGGGGuGCAGCa-GCGCUg -3'
miRNA:   3'- gaCGCGGACCUCuUGUUGgcUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 68035 0.68 0.908524
Target:  5'- gCUGgGUCUGGGuGuuggcuucguucAGCAGCCGGCACUg -3'
miRNA:   3'- -GACgCGGACCU-C------------UUGUUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 166410 0.68 0.908524
Target:  5'- -aGCGCCUGGAuaaauACuacGCCGACcuGCCg -3'
miRNA:   3'- gaCGCGGACCUcu---UGu--UGGCUG--UGGa -5'
13968 3' -55.5 NC_003521.1 + 225955 0.68 0.902465
Target:  5'- -gGCGCCUGG-GAGCGccuggACCccaACGCCUu -3'
miRNA:   3'- gaCGCGGACCuCUUGU-----UGGc--UGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 35332 0.68 0.902465
Target:  5'- -aGCGCCcGGAGGAaGACCugugugguGGCGCCg -3'
miRNA:   3'- gaCGCGGaCCUCUUgUUGG--------CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 139068 0.68 0.902465
Target:  5'- -cGCGCCaUGGAGGGCAucucCUGGCgguuGCCg -3'
miRNA:   3'- gaCGCGG-ACCUCUUGUu---GGCUG----UGGa -5'
13968 3' -55.5 NC_003521.1 + 74191 0.68 0.902465
Target:  5'- -gGCGCCcGGcGcGCGGcCCGACGCCg -3'
miRNA:   3'- gaCGCGGaCCuCuUGUU-GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 128069 0.69 0.896184
Target:  5'- -cGCGCCUGGcagaucauGGAGCAcgugcggcuacgGCCGcCGCCc -3'
miRNA:   3'- gaCGCGGACC--------UCUUGU------------UGGCuGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.