Results 101 - 120 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13968 | 3' | -55.5 | NC_003521.1 | + | 128069 | 0.69 | 0.896184 |
Target: 5'- -cGCGCCUGGcagaucauGGAGCAcgugcggcuacgGCCGcCGCCc -3' miRNA: 3'- gaCGCGGACC--------UCUUGU------------UGGCuGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 216471 | 0.69 | 0.896184 |
Target: 5'- gUGUGCCaGGAGGACc-CCG-CGCCg -3' miRNA: 3'- gACGCGGaCCUCUUGuuGGCuGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 17464 | 0.69 | 0.889682 |
Target: 5'- -aGCGCUcGGAGGAgAGacgaCGGCACCg -3' miRNA: 3'- gaCGCGGaCCUCUUgUUg---GCUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 232404 | 0.69 | 0.889682 |
Target: 5'- gCUGCGCCUGcGGcacGGCAacGCCaGCGCCUg -3' miRNA: 3'- -GACGCGGACcUC---UUGU--UGGcUGUGGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 96254 | 0.69 | 0.889682 |
Target: 5'- -aGCGCCgcgGGAGAcgACAGCgGAgAUCg -3' miRNA: 3'- gaCGCGGa--CCUCU--UGUUGgCUgUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 141737 | 0.69 | 0.882964 |
Target: 5'- -cGCGCCcGGAGaAGCGGCUucGCACCa -3' miRNA: 3'- gaCGCGGaCCUC-UUGUUGGc-UGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 211197 | 0.69 | 0.882964 |
Target: 5'- uUGCaCCUGGGcGAcgACGACCGACgACCc -3' miRNA: 3'- gACGcGGACCU-CU--UGUUGGCUG-UGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 120376 | 0.69 | 0.876034 |
Target: 5'- gCUGUGCCUcuuccaGGAGAACAAaucgcagcaCGACACg- -3' miRNA: 3'- -GACGCGGA------CCUCUUGUUg--------GCUGUGga -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 26088 | 0.69 | 0.876034 |
Target: 5'- aCUGUacGCCUGGAGcgaacuguACGGCUGGCAgCUg -3' miRNA: 3'- -GACG--CGGACCUCu-------UGUUGGCUGUgGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 59164 | 0.69 | 0.876034 |
Target: 5'- cCUGCGCaUGGAGAcgggcuGCGACuCGccGCGCCa -3' miRNA: 3'- -GACGCGgACCUCU------UGUUG-GC--UGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 5685 | 0.69 | 0.868896 |
Target: 5'- -gGCGCCcguccgcGGGGAACGggcGCCGuCACCg -3' miRNA: 3'- gaCGCGGa------CCUCUUGU---UGGCuGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 116086 | 0.69 | 0.861555 |
Target: 5'- -aGCGCCUGcuGAGCcACCcGCGCCUg -3' miRNA: 3'- gaCGCGGACcuCUUGuUGGcUGUGGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 181366 | 0.69 | 0.861555 |
Target: 5'- -cGCGCCcGGAucGGACAGCCuguaGCGCCa -3' miRNA: 3'- gaCGCGGaCCU--CUUGUUGGc---UGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 28840 | 0.69 | 0.861555 |
Target: 5'- -gGCGCCUGGAcGAcgagcugcgGCGGCgCGGCACg- -3' miRNA: 3'- gaCGCGGACCU-CU---------UGUUG-GCUGUGga -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 22988 | 0.69 | 0.861555 |
Target: 5'- uCUGCGCCUGGuuGACGgugauAgCGGCAUCc -3' miRNA: 3'- -GACGCGGACCucUUGU-----UgGCUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 16573 | 0.69 | 0.861555 |
Target: 5'- gCUGCGCCUGcGAG-GCGACCGGgGa-- -3' miRNA: 3'- -GACGCGGAC-CUCuUGUUGGCUgUgga -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 217703 | 0.7 | 0.854017 |
Target: 5'- -cGCaCCUGGAGAGC-ACCGuguuccugugcuGCACCg -3' miRNA: 3'- gaCGcGGACCUCUUGuUGGC------------UGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 117550 | 0.7 | 0.854017 |
Target: 5'- -aGCGUgaGGGGA---GCCGGCACCa -3' miRNA: 3'- gaCGCGgaCCUCUuguUGGCUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 163727 | 0.7 | 0.846286 |
Target: 5'- cCUGCGUCgGGAuGAGCGgcGCCGGCGgCa -3' miRNA: 3'- -GACGCGGaCCU-CUUGU--UGGCUGUgGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 156619 | 0.7 | 0.846286 |
Target: 5'- -cGCGCCUGGu--GCuGCgCGACGCCc -3' miRNA: 3'- gaCGCGGACCucuUGuUG-GCUGUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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