miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 116328 0.67 0.930497
Target:  5'- gCUGCGCCUGGAaGAGCucaaGAU-CCUg -3'
miRNA:   3'- -GACGCGGACCU-CUUGuuggCUGuGGA- -5'
13968 3' -55.5 NC_003521.1 + 116540 0.72 0.731583
Target:  5'- -cGCGCuuuCUGGAGAucguCAGCCG-CGCCUc -3'
miRNA:   3'- gaCGCG---GACCUCUu---GUUGGCuGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 116900 0.66 0.960252
Target:  5'- -cGCGCCggcgGGAGAccccuuucGCu-CCGACAgCUa -3'
miRNA:   3'- gaCGCGGa---CCUCU--------UGuuGGCUGUgGA- -5'
13968 3' -55.5 NC_003521.1 + 116920 0.72 0.759962
Target:  5'- -gGCGgCUGGAGAGCGagagGCCGGCguagcuGCCg -3'
miRNA:   3'- gaCGCgGACCUCUUGU----UGGCUG------UGGa -5'
13968 3' -55.5 NC_003521.1 + 117550 0.7 0.854017
Target:  5'- -aGCGUgaGGGGA---GCCGGCACCa -3'
miRNA:   3'- gaCGCGgaCCUCUuguUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 120376 0.69 0.876034
Target:  5'- gCUGUGCCUcuuccaGGAGAACAAaucgcagcaCGACACg- -3'
miRNA:   3'- -GACGCGGA------CCUCUUGUUg--------GCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 120412 0.75 0.592997
Target:  5'- cCUGCGCaccuccgUGGAGGugAGCCG-CACCUc -3'
miRNA:   3'- -GACGCGg------ACCUCUugUUGGCuGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 120501 0.68 0.912052
Target:  5'- -cGCGUgUGGGGGACGACguggcuuuuuauaGACACCc -3'
miRNA:   3'- gaCGCGgACCUCUUGUUGg------------CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 124186 0.67 0.944149
Target:  5'- gUGCGCCugccggcUGGGGGugAGCgGGC-CCUu -3'
miRNA:   3'- gACGCGG-------ACCUCUugUUGgCUGuGGA- -5'
13968 3' -55.5 NC_003521.1 + 124190 0.74 0.622925
Target:  5'- -gGCGCCgcugcaacuggUGGAGAACAgcGCCGcGCGCCg -3'
miRNA:   3'- gaCGCGG-----------ACCUCUUGU--UGGC-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 125240 0.77 0.486557
Target:  5'- gCUGCGCCgcgUGGAGGGCAACCaGAU-CCUg -3'
miRNA:   3'- -GACGCGG---ACCUCUUGUUGG-CUGuGGA- -5'
13968 3' -55.5 NC_003521.1 + 125838 0.66 0.963632
Target:  5'- uCUGCGUCgagGGcacGGAACAACUGAUcgaaaacccguGCCg -3'
miRNA:   3'- -GACGCGGa--CC---UCUUGUUGGCUG-----------UGGa -5'
13968 3' -55.5 NC_003521.1 + 127525 0.7 0.813576
Target:  5'- -cGCGCCUGGGcgccauGGACG-CCGACgaGCCg -3'
miRNA:   3'- gaCGCGGACCU------CUUGUuGGCUG--UGGa -5'
13968 3' -55.5 NC_003521.1 + 128069 0.69 0.896184
Target:  5'- -cGCGCCUGGcagaucauGGAGCAcgugcggcuacgGCCGcCGCCc -3'
miRNA:   3'- gaCGCGGACC--------UCUUGU------------UGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 128128 0.66 0.956291
Target:  5'- -cGCGCaucCUGGuGGGCAACCugcccgacgggcuGGCGCCg -3'
miRNA:   3'- gaCGCG---GACCuCUUGUUGG-------------CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 128575 0.7 0.830275
Target:  5'- -cGCgGCUacaccacggUGGAGAGCAagcucaagcugACCGACACCa -3'
miRNA:   3'- gaCG-CGG---------ACCUCUUGU-----------UGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 128697 0.67 0.932494
Target:  5'- -aGCGCucggucaucCUGGAGAaccugcggcgcgucuACAaaaacACCGACACCa -3'
miRNA:   3'- gaCGCG---------GACCUCU---------------UGU-----UGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 129057 0.72 0.712238
Target:  5'- -cGCGCCUGGuGGA-GGCCGcCACCg -3'
miRNA:   3'- gaCGCGGACCuCUUgUUGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 129216 0.76 0.495901
Target:  5'- -gGCGCgUGGuGGGCAGuCCGGCGCCg -3'
miRNA:   3'- gaCGCGgACCuCUUGUU-GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 129308 0.7 0.813576
Target:  5'- gCUGCGCgCgcucaAGAACAcgGCCGACGCCa -3'
miRNA:   3'- -GACGCG-Gacc--UCUUGU--UGGCUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.