miRNA display CGI


Results 121 - 140 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 153229 0.69 0.896184
Target:  5'- -aGUGCCUGGAGGAgcaGAUCGAgGCg- -3'
miRNA:   3'- gaCGCGGACCUCUUg--UUGGCUgUGga -5'
13968 3' -55.5 NC_003521.1 + 153641 0.7 0.822008
Target:  5'- cCUGCGCUacGAcGGGCuguGCCGGCACCa -3'
miRNA:   3'- -GACGCGGacCU-CUUGu--UGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 153704 0.67 0.952856
Target:  5'- gCUG-GCCUacGAGcGCGACCGGCugCUg -3'
miRNA:   3'- -GACgCGGAc-CUCuUGUUGGCUGugGA- -5'
13968 3' -55.5 NC_003521.1 + 153762 0.73 0.662886
Target:  5'- -aGCGCCUGGAGGcGCAGCUG-CGCg- -3'
miRNA:   3'- gaCGCGGACCUCU-UGUUGGCuGUGga -5'
13968 3' -55.5 NC_003521.1 + 154709 0.67 0.944586
Target:  5'- -cGCGCgaGGAGAACAccauccAgCGGCugCa -3'
miRNA:   3'- gaCGCGgaCCUCUUGU------UgGCUGugGa -5'
13968 3' -55.5 NC_003521.1 + 155860 0.66 0.969779
Target:  5'- -cGCGCUucgUGGAGAuccuGCAGaagGACACCUu -3'
miRNA:   3'- gaCGCGG---ACCUCU----UGUUgg-CUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 156619 0.7 0.846286
Target:  5'- -cGCGCCUGGu--GCuGCgCGACGCCc -3'
miRNA:   3'- gaCGCGGACCucuUGuUG-GCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 163727 0.7 0.846286
Target:  5'- cCUGCGUCgGGAuGAGCGgcGCCGGCGgCa -3'
miRNA:   3'- -GACGCGGaCCU-CUUGU--UGGCUGUgGa -5'
13968 3' -55.5 NC_003521.1 + 164409 0.71 0.787369
Target:  5'- aCUGCGaggacgCUGGGGGACAGCgGAUuCCUg -3'
miRNA:   3'- -GACGCg-----GACCUCUUGUUGgCUGuGGA- -5'
13968 3' -55.5 NC_003521.1 + 164820 0.77 0.477296
Target:  5'- -aGCGCCcgcgGGGGAggaggaaccgGCGGCCGGCGCCa -3'
miRNA:   3'- gaCGCGGa---CCUCU----------UGUUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 166410 0.68 0.908524
Target:  5'- -aGCGCCUGGAuaaauACuacGCCGACcuGCCg -3'
miRNA:   3'- gaCGCGGACCUcu---UGu--UGGCUG--UGGa -5'
13968 3' -55.5 NC_003521.1 + 168241 0.66 0.956291
Target:  5'- gUGCGCCUGGuGGucgaaaaGCAGCCaGACGu-- -3'
miRNA:   3'- gACGCGGACCuCU-------UGUUGG-CUGUgga -5'
13968 3' -55.5 NC_003521.1 + 168245 0.67 0.952856
Target:  5'- -aGCGCCUGGAacGCGuuGCCG-CACg- -3'
miRNA:   3'- gaCGCGGACCUcuUGU--UGGCuGUGga -5'
13968 3' -55.5 NC_003521.1 + 168362 0.66 0.956291
Target:  5'- -gGCGCgugUUGGAGGGCAuCCGACcggugguGCCg -3'
miRNA:   3'- gaCGCG---GACCUCUUGUuGGCUG-------UGGa -5'
13968 3' -55.5 NC_003521.1 + 172597 0.71 0.804987
Target:  5'- gUGUGCCac-AGGACGGCCGAgGCCUg -3'
miRNA:   3'- gACGCGGaccUCUUGUUGGCUgUGGA- -5'
13968 3' -55.5 NC_003521.1 + 181366 0.69 0.861555
Target:  5'- -cGCGCCcGGAucGGACAGCCuguaGCGCCa -3'
miRNA:   3'- gaCGCGGaCCU--CUUGUUGGc---UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 185120 0.67 0.944586
Target:  5'- gCUGUGCCUGGGGucgGCAgucgcAgCGGCGCg- -3'
miRNA:   3'- -GACGCGGACCUCu--UGU-----UgGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 192239 0.72 0.712238
Target:  5'- -gGCGCCgcgGGAGggUGGCCGuuagccguCACCUu -3'
miRNA:   3'- gaCGCGGa--CCUCuuGUUGGCu-------GUGGA- -5'
13968 3' -55.5 NC_003521.1 + 193036 0.66 0.960252
Target:  5'- -cGUGCCggUGGAGAucgagcugauggACGGCCcgcgGACGCCg -3'
miRNA:   3'- gaCGCGG--ACCUCU------------UGUUGG----CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 193244 0.7 0.83837
Target:  5'- -aGCGCCUGGGGuaccccggauACggUCGGCugCg -3'
miRNA:   3'- gaCGCGGACCUCu---------UGuuGGCUGugGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.