miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 146402 0.7 0.83837
Target:  5'- -cGCGCUcgcGGAaAAUGGCCGACACCa -3'
miRNA:   3'- gaCGCGGa--CCUcUUGUUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 145800 0.67 0.944586
Target:  5'- -aGCGCUcGGAGGugAucgucuUCGACGCCa -3'
miRNA:   3'- gaCGCGGaCCUCUugUu-----GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 144192 0.79 0.379465
Target:  5'- -cGCGCgCUGGAGAacgGCAagcugcagcagugcGCCGACGCCUg -3'
miRNA:   3'- gaCGCG-GACCUCU---UGU--------------UGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 144141 0.73 0.686712
Target:  5'- gUGCGCCUGGGcuccGAggcguugcucuucaaGCAcGCCGGCGCCg -3'
miRNA:   3'- gACGCGGACCU----CU---------------UGU-UGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 142703 0.67 0.948832
Target:  5'- -cGUGCCUGaAGAcGCugguGCCGACGCUg -3'
miRNA:   3'- gaCGCGGACcUCU-UGu---UGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 142118 0.66 0.960252
Target:  5'- gUGCGaCCUGGAGcuggaggcgGACGACgCGgaaaACGCCa -3'
miRNA:   3'- gACGC-GGACCUC---------UUGUUG-GC----UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 141804 0.75 0.592997
Target:  5'- aUGCGCCUGGAccucGAGCGGCaacaGCACCa -3'
miRNA:   3'- gACGCGGACCU----CUUGUUGgc--UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 141737 0.69 0.882964
Target:  5'- -cGCGCCcGGAGaAGCGGCUucGCACCa -3'
miRNA:   3'- gaCGCGGaCCUC-UUGUUGGc-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 139068 0.68 0.902465
Target:  5'- -cGCGCCaUGGAGGGCAucucCUGGCgguuGCCg -3'
miRNA:   3'- gaCGCGG-ACCUCUUGUu---GGCUG----UGGa -5'
13968 3' -55.5 NC_003521.1 + 137882 0.67 0.948832
Target:  5'- -aGCGCCUGGAccGCGACgccuCGGC-CCUc -3'
miRNA:   3'- gaCGCGGACCUcuUGUUG----GCUGuGGA- -5'
13968 3' -55.5 NC_003521.1 + 136969 0.66 0.963632
Target:  5'- gCUGCGCgaGGAGAucgaggcCAACCGgauagaucgGCAUCa -3'
miRNA:   3'- -GACGCGgaCCUCUu------GUUGGC---------UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 136054 0.66 0.969779
Target:  5'- gUGCGaCCUGGGcAGCGGCUGcGCGCUc -3'
miRNA:   3'- gACGC-GGACCUcUUGUUGGC-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 133351 0.67 0.930497
Target:  5'- -gGCGCCggacgUGGAGAucaGCAcgguccGCCGGCACa- -3'
miRNA:   3'- gaCGCGG-----ACCUCU---UGU------UGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 132887 0.66 0.969779
Target:  5'- -gGCGCCgccgccgagucUGGAagccguugcGGAC-GCCGACGCCg -3'
miRNA:   3'- gaCGCGG-----------ACCU---------CUUGuUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 130771 0.67 0.942825
Target:  5'- -cGCGCCgGGGGAGCAGaaagggaagaagaCGGcCACCa -3'
miRNA:   3'- gaCGCGGaCCUCUUGUUg------------GCU-GUGGa -5'
13968 3' -55.5 NC_003521.1 + 129798 0.67 0.944149
Target:  5'- -aGCGCCgccgcgaUGGAGAACuggUCGGCGCUc -3'
miRNA:   3'- gaCGCGG-------ACCUCUUGuu-GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 129308 0.7 0.813576
Target:  5'- gCUGCGCgCgcucaAGAACAcgGCCGACGCCa -3'
miRNA:   3'- -GACGCG-Gacc--UCUUGU--UGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 129216 0.76 0.495901
Target:  5'- -gGCGCgUGGuGGGCAGuCCGGCGCCg -3'
miRNA:   3'- gaCGCGgACCuCUUGUU-GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 129057 0.72 0.712238
Target:  5'- -cGCGCCUGGuGGA-GGCCGcCACCg -3'
miRNA:   3'- gaCGCGGACCuCUUgUUGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 128697 0.67 0.932494
Target:  5'- -aGCGCucggucaucCUGGAGAaccugcggcgcgucuACAaaaacACCGACACCa -3'
miRNA:   3'- gaCGCG---------GACCUCU---------------UGU-----UGGCUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.