Results 81 - 100 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13968 | 3' | -55.5 | NC_003521.1 | + | 172597 | 0.71 | 0.804987 |
Target: 5'- gUGUGCCac-AGGACGGCCGAgGCCUg -3' miRNA: 3'- gACGCGGaccUCUUGUUGGCUgUGGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 129308 | 0.7 | 0.813576 |
Target: 5'- gCUGCGCgCgcucaAGAACAcgGCCGACGCCa -3' miRNA: 3'- -GACGCG-Gacc--UCUUGU--UGGCUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 127525 | 0.7 | 0.813576 |
Target: 5'- -cGCGCCUGGGcgccauGGACG-CCGACgaGCCg -3' miRNA: 3'- gaCGCGGACCU------CUUGUuGGCUG--UGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 153641 | 0.7 | 0.822008 |
Target: 5'- cCUGCGCUacGAcGGGCuguGCCGGCACCa -3' miRNA: 3'- -GACGCGGacCU-CUUGu--UGGCUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 55214 | 0.7 | 0.822008 |
Target: 5'- gUGCGCUcaaGGAGAACAccACCGuCACUUu -3' miRNA: 3'- gACGCGGa--CCUCUUGU--UGGCuGUGGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 128575 | 0.7 | 0.830275 |
Target: 5'- -cGCgGCUacaccacggUGGAGAGCAagcucaagcugACCGACACCa -3' miRNA: 3'- gaCG-CGG---------ACCUCUUGU-----------UGGCUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 27282 | 0.72 | 0.731583 |
Target: 5'- -cGCGCCUGGAGccuCGguuucgauGCCGugGCCc -3' miRNA: 3'- gaCGCGGACCUCuu-GU--------UGGCugUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 57876 | 0.72 | 0.721948 |
Target: 5'- -cGUGCCUGGAGcGCGACgGcACGCUg -3' miRNA: 3'- gaCGCGGACCUCuUGUUGgC-UGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 125240 | 0.77 | 0.486557 |
Target: 5'- gCUGCGCCgcgUGGAGGGCAACCaGAU-CCUg -3' miRNA: 3'- -GACGCGG---ACCUCUUGUUGG-CUGuGGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 153009 | 0.77 | 0.486557 |
Target: 5'- -cGCGCUgcccgUGGAGGACAACCGGCuggugGCCa -3' miRNA: 3'- gaCGCGG-----ACCUCUUGUUGGCUG-----UGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 152289 | 0.76 | 0.514828 |
Target: 5'- gCUGCgGCCUGGuGAAgc-CCGACACCUg -3' miRNA: 3'- -GACG-CGGACCuCUUguuGGCUGUGGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 46789 | 0.76 | 0.534042 |
Target: 5'- gUGCGCCUGGAGAAgAcgcccguguGCCaGCACCc -3' miRNA: 3'- gACGCGGACCUCUUgU---------UGGcUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 102259 | 0.75 | 0.583067 |
Target: 5'- cCUGUGCCUGGAcacGCAGCUG-CACCg -3' miRNA: 3'- -GACGCGGACCUcu-UGUUGGCuGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 120412 | 0.75 | 0.592997 |
Target: 5'- cCUGCGCaccuccgUGGAGGugAGCCG-CACCUc -3' miRNA: 3'- -GACGCGg------ACCUCUugUUGGCuGUGGA- -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 88464 | 0.74 | 0.609938 |
Target: 5'- -aGCaGCCUGGAGAAgGACCaccugaugcucagcGACGCCg -3' miRNA: 3'- gaCG-CGGACCUCUUgUUGG--------------CUGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 124190 | 0.74 | 0.622925 |
Target: 5'- -gGCGCCgcugcaacuggUGGAGAACAgcGCCGcGCGCCg -3' miRNA: 3'- gaCGCGG-----------ACCUCUUGU--UGGC-UGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 219449 | 0.74 | 0.652912 |
Target: 5'- aUGgGCCUGGGGcuCAGCCGcCACUg -3' miRNA: 3'- gACgCGGACCUCuuGUUGGCuGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 153762 | 0.73 | 0.662886 |
Target: 5'- -aGCGCCUGGAGGcGCAGCUG-CGCg- -3' miRNA: 3'- gaCGCGGACCUCU-UGUUGGCuGUGga -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 129057 | 0.72 | 0.712238 |
Target: 5'- -cGCGCCUGGuGGA-GGCCGcCACCg -3' miRNA: 3'- gaCGCGGACCuCUUgUUGGCuGUGGa -5' |
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13968 | 3' | -55.5 | NC_003521.1 | + | 218609 | 0.72 | 0.721948 |
Target: 5'- -gGCcuGCCUGGugauGAAC-ACCGGCACCa -3' miRNA: 3'- gaCG--CGGACCu---CUUGuUGGCUGUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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