miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 211197 0.69 0.882964
Target:  5'- uUGCaCCUGGGcGAcgACGACCGACgACCc -3'
miRNA:   3'- gACGcGGACCU-CU--UGUUGGCUG-UGGa -5'
13968 3' -55.5 NC_003521.1 + 153229 0.69 0.896184
Target:  5'- -aGUGCCUGGAGGAgcaGAUCGAgGCg- -3'
miRNA:   3'- gaCGCGGACCUCUUg--UUGGCUgUGga -5'
13968 3' -55.5 NC_003521.1 + 57876 0.72 0.721948
Target:  5'- -cGUGCCUGGAGcGCGACgGcACGCUg -3'
miRNA:   3'- gaCGCGGACCUCuUGUUGgC-UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 116920 0.72 0.759962
Target:  5'- -gGCGgCUGGAGAGCGagagGCCGGCguagcuGCCg -3'
miRNA:   3'- gaCGCgGACCUCUUGU----UGGCUG------UGGa -5'
13968 3' -55.5 NC_003521.1 + 17775 0.71 0.787369
Target:  5'- -cGCGCCgccgGGccgGGAACcGCCGugACCg -3'
miRNA:   3'- gaCGCGGa---CC---UCUUGuUGGCugUGGa -5'
13968 3' -55.5 NC_003521.1 + 129308 0.7 0.813576
Target:  5'- gCUGCGCgCgcucaAGAACAcgGCCGACGCCa -3'
miRNA:   3'- -GACGCG-Gacc--UCUUGU--UGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 240308 0.7 0.83837
Target:  5'- -gGCGCCaucggcGGAGGACcgcCCGGCGCCc -3'
miRNA:   3'- gaCGCGGa-----CCUCUUGuu-GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 217703 0.7 0.854017
Target:  5'- -cGCaCCUGGAGAGC-ACCGuguuccugugcuGCACCg -3'
miRNA:   3'- gaCGcGGACCUCUUGuUGGC------------UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 116086 0.69 0.861555
Target:  5'- -aGCGCCUGcuGAGCcACCcGCGCCUg -3'
miRNA:   3'- gaCGCGGACcuCUUGuUGGcUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 120376 0.69 0.876034
Target:  5'- gCUGUGCCUcuuccaGGAGAACAAaucgcagcaCGACACg- -3'
miRNA:   3'- -GACGCGGA------CCUCUUGUUg--------GCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 153704 0.67 0.952856
Target:  5'- gCUG-GCCUacGAGcGCGACCGGCugCUg -3'
miRNA:   3'- -GACgCGGAc-CUCuUGUUGGCUGugGA- -5'
13968 3' -55.5 NC_003521.1 + 28020 0.67 0.952856
Target:  5'- gCUGCGCCgucgGGAcGACAuCgCGGCGCUc -3'
miRNA:   3'- -GACGCGGa---CCUcUUGUuG-GCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 35332 0.68 0.902465
Target:  5'- -aGCGCCcGGAGGAaGACCugugugguGGCGCCg -3'
miRNA:   3'- gaCGCGGaCCUCUUgUUGG--------CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 166410 0.68 0.908524
Target:  5'- -aGCGCCUGGAuaaauACuacGCCGACcuGCCg -3'
miRNA:   3'- gaCGCGGACCUcu---UGu--UGGCUG--UGGa -5'
13968 3' -55.5 NC_003521.1 + 101829 0.68 0.919966
Target:  5'- -cGCGCggagcgGGGGGACGA-CGACGCCg -3'
miRNA:   3'- gaCGCGga----CCUCUUGUUgGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 39564 0.68 0.925345
Target:  5'- aUGCuGCCUGG-GAGaGugUGACGCCg -3'
miRNA:   3'- gACG-CGGACCuCUUgUugGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 10770 0.67 0.934454
Target:  5'- -cGcCGCCUGGGGGGCcacgccauccccGCCGGCGCa- -3'
miRNA:   3'- gaC-GCGGACCUCUUGu-----------UGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 129798 0.67 0.944149
Target:  5'- -aGCGCCgccgcgaUGGAGAACuggUCGGCGCUc -3'
miRNA:   3'- gaCGCGG-------ACCUCUUGuu-GGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 84957 0.67 0.94716
Target:  5'- -gGCcgGCCUGGAGGugugcacGCAGCugcuggcgcugcugCGACGCCUg -3'
miRNA:   3'- gaCG--CGGACCUCU-------UGUUG--------------GCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 73503 0.67 0.948832
Target:  5'- -aGCGCgugucgaUGGAGAGCGGCgcgcagaGGCGCCg -3'
miRNA:   3'- gaCGCGg------ACCUCUUGUUGg------CUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.