miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 105850 0.67 0.940116
Target:  5'- gCUGCGCCggcGGcGGcgacgacacgGCGGCgGACGCCg -3'
miRNA:   3'- -GACGCGGa--CCuCU----------UGUUGgCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 211666 0.67 0.944586
Target:  5'- gUGCGCC-GGcugcuGCAcgagaGCCGGCGCCUg -3'
miRNA:   3'- gACGCGGaCCucu--UGU-----UGGCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 44106 0.67 0.944586
Target:  5'- -gGCGCCUGuGAcGGgcccGCGGCCGGCGgCg -3'
miRNA:   3'- gaCGCGGAC-CU-CU----UGUUGGCUGUgGa -5'
13968 3' -55.5 NC_003521.1 + 84957 0.67 0.94716
Target:  5'- -gGCcgGCCUGGAGGugugcacGCAGCugcuggcgcugcugCGACGCCUg -3'
miRNA:   3'- gaCG--CGGACCUCU-------UGUUG--------------GCUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 142703 0.67 0.948832
Target:  5'- -cGUGCCUGaAGAcGCugguGCCGACGCUg -3'
miRNA:   3'- gaCGCGGACcUCU-UGu---UGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 46369 0.67 0.952463
Target:  5'- gCUGCGUCcGGAG-GCGGCgcuacaaggucugCGACGCCg -3'
miRNA:   3'- -GACGCGGaCCUCuUGUUG-------------GCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 28020 0.67 0.952856
Target:  5'- gCUGCGCCgucgGGAcGACAuCgCGGCGCUc -3'
miRNA:   3'- -GACGCGGa---CCUcUUGUuG-GCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 85104 0.68 0.925345
Target:  5'- gCUGCGUUUGGAucacuGCGACCGcCAUCa -3'
miRNA:   3'- -GACGCGGACCUcu---UGUUGGCuGUGGa -5'
13968 3' -55.5 NC_003521.1 + 101829 0.68 0.919966
Target:  5'- -cGCGCggagcgGGGGGACGA-CGACGCCg -3'
miRNA:   3'- gaCGCGga----CCUCUUGUUgGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 103572 0.68 0.919966
Target:  5'- -aGCGCCUGcuGGAguACCGGCGCg- -3'
miRNA:   3'- gaCGCGGACcuCUUguUGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 128128 0.66 0.956291
Target:  5'- -cGCGCaucCUGGuGGGCAACCugcccgacgggcuGGCGCCg -3'
miRNA:   3'- gaCGCG---GACCuCUUGUUGG-------------CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 193036 0.66 0.960252
Target:  5'- -cGUGCCggUGGAGAucgagcugauggACGGCCcgcgGACGCCg -3'
miRNA:   3'- gaCGCGG--ACCUCU------------UGUUGG----CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 125838 0.66 0.963632
Target:  5'- uCUGCGUCgagGGcacGGAACAACUGAUcgaaaacccguGCCg -3'
miRNA:   3'- -GACGCGGa--CC---UCUUGUUGGCUG-----------UGGa -5'
13968 3' -55.5 NC_003521.1 + 17102 0.66 0.966806
Target:  5'- cCUGCGCCgGcGAGGACggUCGGuccuCAUCg -3'
miRNA:   3'- -GACGCGGaC-CUCUUGuuGGCU----GUGGa -5'
13968 3' -55.5 NC_003521.1 + 132887 0.66 0.969779
Target:  5'- -gGCGCCgccgccgagucUGGAagccguugcGGAC-GCCGACGCCg -3'
miRNA:   3'- gaCGCGG-----------ACCU---------CUUGuUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 116086 0.69 0.861555
Target:  5'- -aGCGCCUGcuGAGCcACCcGCGCCUg -3'
miRNA:   3'- gaCGCGGACcuCUUGuUGGcUGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 59164 0.69 0.876034
Target:  5'- cCUGCGCaUGGAGAcgggcuGCGACuCGccGCGCCa -3'
miRNA:   3'- -GACGCGgACCUCU------UGUUG-GC--UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 153229 0.69 0.896184
Target:  5'- -aGUGCCUGGAGGAgcaGAUCGAgGCg- -3'
miRNA:   3'- gaCGCGGACCUCUUg--UUGGCUgUGga -5'
13968 3' -55.5 NC_003521.1 + 225955 0.68 0.902465
Target:  5'- -gGCGCCUGG-GAGCGccuggACCccaACGCCUu -3'
miRNA:   3'- gaCGCGGACCuCUUGU-----UGGc--UGUGGA- -5'
13968 3' -55.5 NC_003521.1 + 26526 0.68 0.908524
Target:  5'- -gGUGCCUGGGGuGCAGCa-GCGCUg -3'
miRNA:   3'- gaCGCGGACCUCuUGUUGgcUGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.