miRNA display CGI


Results 101 - 120 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 3' -55.5 NC_003521.1 + 46369 0.67 0.952463
Target:  5'- gCUGCGUCcGGAG-GCGGCgcuacaaggucugCGACGCCg -3'
miRNA:   3'- -GACGCGGaCCUCuUGUUG-------------GCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 222516 0.67 0.948832
Target:  5'- -cGCGCagCUGGAGAGCGcGCuCGACugguuCCUg -3'
miRNA:   3'- gaCGCG--GACCUCUUGU-UG-GCUGu----GGA- -5'
13968 3' -55.5 NC_003521.1 + 168362 0.66 0.956291
Target:  5'- -gGCGCgugUUGGAGGGCAuCCGACcggugguGCCg -3'
miRNA:   3'- gaCGCG---GACCUCUUGUuGGCUG-------UGGa -5'
13968 3' -55.5 NC_003521.1 + 211108 0.67 0.952856
Target:  5'- -cGCGCCgaGGcucAGCAGCCaGGCGCCg -3'
miRNA:   3'- gaCGCGGa-CCuc-UUGUUGG-CUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 142118 0.66 0.960252
Target:  5'- gUGCGaCCUGGAGcuggaggcgGACGACgCGgaaaACGCCa -3'
miRNA:   3'- gACGC-GGACCUC---------UUGUUG-GC----UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 219253 0.66 0.960252
Target:  5'- -aGCGCCgGGuAGAGCAgggcccgcagggGCUGGCACa- -3'
miRNA:   3'- gaCGCGGaCC-UCUUGU------------UGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 7743 0.67 0.952856
Target:  5'- uUGCGCCUGGAucgccGGACuGCUGAuCAUUg -3'
miRNA:   3'- gACGCGGACCU-----CUUGuUGGCU-GUGGa -5'
13968 3' -55.5 NC_003521.1 + 116900 0.66 0.960252
Target:  5'- -cGCGCCggcgGGAGAccccuuucGCu-CCGACAgCUa -3'
miRNA:   3'- gaCGCGGa---CCUCU--------UGuuGGCUGUgGA- -5'
13968 3' -55.5 NC_003521.1 + 150479 0.66 0.963632
Target:  5'- -aGCGCCUGGuGGGgcccuuCAGCuuuuaCGGCGCCg -3'
miRNA:   3'- gaCGCGGACCuCUU------GUUG-----GCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 136969 0.66 0.963632
Target:  5'- gCUGCGCgaGGAGAucgaggcCAACCGgauagaucgGCAUCa -3'
miRNA:   3'- -GACGCGgaCCUCUu------GUUGGC---------UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 71364 0.76 0.524401
Target:  5'- -cGCGCCUGGcGAcgaacccgccGCcGCCGACGCCg -3'
miRNA:   3'- gaCGCGGACCuCU----------UGuUGGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 168245 0.67 0.952856
Target:  5'- -aGCGCCUGGAacGCGuuGCCG-CACg- -3'
miRNA:   3'- gaCGCGGACCUcuUGU--UGGCuGUGga -5'
13968 3' -55.5 NC_003521.1 + 103877 0.66 0.963632
Target:  5'- -aGCGCCgacagGGGGAugGGCUGcCGCg- -3'
miRNA:   3'- gaCGCGGa----CCUCUugUUGGCuGUGga -5'
13968 3' -55.5 NC_003521.1 + 163727 0.7 0.846286
Target:  5'- cCUGCGUCgGGAuGAGCGgcGCCGGCGgCa -3'
miRNA:   3'- -GACGCGGaCCU-CUUGU--UGGCUGUgGa -5'
13968 3' -55.5 NC_003521.1 + 16573 0.69 0.861555
Target:  5'- gCUGCGCCUGcGAG-GCGACCGGgGa-- -3'
miRNA:   3'- -GACGCGGAC-CUCuUGUUGGCUgUgga -5'
13968 3' -55.5 NC_003521.1 + 63151 0.66 0.960252
Target:  5'- gCUGCGCg-GGcuGACGAUCGACGCg- -3'
miRNA:   3'- -GACGCGgaCCucUUGUUGGCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 22988 0.69 0.861555
Target:  5'- uCUGCGCCUGGuuGACGgugauAgCGGCAUCc -3'
miRNA:   3'- -GACGCGGACCucUUGU-----UgGCUGUGGa -5'
13968 3' -55.5 NC_003521.1 + 28840 0.69 0.861555
Target:  5'- -gGCGCCUGGAcGAcgagcugcgGCGGCgCGGCACg- -3'
miRNA:   3'- gaCGCGGACCU-CU---------UGUUG-GCUGUGga -5'
13968 3' -55.5 NC_003521.1 + 181366 0.69 0.861555
Target:  5'- -cGCGCCcGGAucGGACAGCCuguaGCGCCa -3'
miRNA:   3'- gaCGCGGaCCU--CUUGUUGGc---UGUGGa -5'
13968 3' -55.5 NC_003521.1 + 17727 0.73 0.692634
Target:  5'- -gGUGCCgggGGAGAACccgucGGCCGAgGCCg -3'
miRNA:   3'- gaCGCGGa--CCUCUUG-----UUGGCUgUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.