miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 3' -54.8 NC_003521.1 + 126161 0.71 0.77815
Target:  5'- aACAGGUCCU---GCACGCGCACg--- -3'
miRNA:   3'- -UGUUCAGGAagcCGUGCGCGUGguua -5'
13969 3' -54.8 NC_003521.1 + 56456 0.71 0.796331
Target:  5'- cCAGGUCCgagaGGCGC-CGCGCCAc- -3'
miRNA:   3'- uGUUCAGGaag-CCGUGcGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 62343 0.66 0.968186
Target:  5'- gACucGUCCUUCGGCAgcacgGUGCACg--- -3'
miRNA:   3'- -UGuuCAGGAAGCCGUg----CGCGUGguua -5'
13969 3' -54.8 NC_003521.1 + 222178 0.66 0.967268
Target:  5'- aGCAGGUCCgugCGGCcccACGCcacguuguuauuagGCACCu-- -3'
miRNA:   3'- -UGUUCAGGaa-GCCG---UGCG--------------CGUGGuua -5'
13969 3' -54.8 NC_003521.1 + 37412 0.66 0.965054
Target:  5'- cACGGG-CCUgaccgugUGGCGCG-GCGCCGAg -3'
miRNA:   3'- -UGUUCaGGAa------GCCGUGCgCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 35379 0.68 0.903895
Target:  5'- cCGAGUCCcccUCGGCgaggACGCGgGCCGc- -3'
miRNA:   3'- uGUUCAGGa--AGCCG----UGCGCgUGGUua -5'
13969 3' -54.8 NC_003521.1 + 70704 0.68 0.926897
Target:  5'- cGCAAG-CUgcgUCGGCGCcUGCGCCGGa -3'
miRNA:   3'- -UGUUCaGGa--AGCCGUGcGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 143524 0.68 0.926897
Target:  5'- uCGGG-CCUgaUCcGCACGCGCGCCGc- -3'
miRNA:   3'- uGUUCaGGA--AGcCGUGCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 103447 0.68 0.926897
Target:  5'- cCAGGUCg--CGGCGguUGCGCGCCAc- -3'
miRNA:   3'- uGUUCAGgaaGCCGU--GCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 130299 0.68 0.93206
Target:  5'- gGCGAGgCCg-CGGCGcCGCGCAuCCAGg -3'
miRNA:   3'- -UGUUCaGGaaGCCGU-GCGCGU-GGUUa -5'
13969 3' -54.8 NC_003521.1 + 73216 0.68 0.93206
Target:  5'- cCGAGcgCCUgCGGCGCcucuGCGCGCCGc- -3'
miRNA:   3'- uGUUCa-GGAaGCCGUG----CGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 130459 0.68 0.93206
Target:  5'- cCGAGUUUUUCGGuCGCGUGCuggcCCAGc -3'
miRNA:   3'- uGUUCAGGAAGCC-GUGCGCGu---GGUUa -5'
13969 3' -54.8 NC_003521.1 + 224020 0.68 0.903895
Target:  5'- gGCGGGcCCggcggUCGGgGCGgGCGCCGu- -3'
miRNA:   3'- -UGUUCaGGa----AGCCgUGCgCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 70201 0.68 0.90202
Target:  5'- gGCAGGUCgggUCGGCccucgaagcgcuugGCGCGCAgCAGg -3'
miRNA:   3'- -UGUUCAGga-AGCCG--------------UGCGCGUgGUUa -5'
13969 3' -54.8 NC_003521.1 + 133370 0.69 0.884222
Target:  5'- aGCAcGGUCCgcCGGCACaGCGCGgCGGUc -3'
miRNA:   3'- -UGU-UCAGGaaGCCGUG-CGCGUgGUUA- -5'
13969 3' -54.8 NC_003521.1 + 102822 0.68 0.921498
Target:  5'- aGCAAGUag--CGGCGCugcgagaaGCGCGCCAGg -3'
miRNA:   3'- -UGUUCAggaaGCCGUG--------CGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 19219 0.67 0.950372
Target:  5'- uGCGAccuggCUUUCGGCuCGCGCACgCAAa -3'
miRNA:   3'- -UGUUca---GGAAGCCGuGCGCGUG-GUUa -5'
13969 3' -54.8 NC_003521.1 + 215931 0.66 0.958153
Target:  5'- ---cGUCCcgCGGCAUggugagguaGCGCACCAu- -3'
miRNA:   3'- uguuCAGGaaGCCGUG---------CGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 65358 0.66 0.965054
Target:  5'- gACGugcuGUCCggggagaCGGCGCGC-CGCCGAUc -3'
miRNA:   3'- -UGUu---CAGGaa-----GCCGUGCGcGUGGUUA- -5'
13969 3' -54.8 NC_003521.1 + 153396 0.66 0.965054
Target:  5'- cGCAGGaucUCC-UCGuGCAgGUGCGCCAc- -3'
miRNA:   3'- -UGUUC---AGGaAGC-CGUgCGCGUGGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.