miRNA display CGI


Results 81 - 100 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 233386 0.68 0.940885
Target:  5'- uGguGCUGUGCgccGCGUccgUGAUgGAacacaGGGGCa -3'
miRNA:   3'- -CguCGACACG---UGCA---ACUGgCU-----CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 95554 0.68 0.940885
Target:  5'- cGCgAGCUG-GC-CGccgaGGCCGAGGAGg -3'
miRNA:   3'- -CG-UCGACaCGuGCaa--CUGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 100890 0.68 0.936211
Target:  5'- -gAGCUGgccuuccgGC-CGUgccCCGAGGAGCa -3'
miRNA:   3'- cgUCGACa-------CGuGCAacuGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 87161 0.68 0.936211
Target:  5'- cGCAGUUcGUGCGCGc-GGCCGuGcAGCg -3'
miRNA:   3'- -CGUCGA-CACGUGCaaCUGGCuCcUCG- -5'
13969 5' -54.4 NC_003521.1 + 109677 0.68 0.936211
Target:  5'- aGCGGCgGaUGCGauc-GGCCGAGGGGUc -3'
miRNA:   3'- -CGUCGaC-ACGUgcaaCUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 92044 0.69 0.931307
Target:  5'- cGCGGCUccucgGCGCGaccGCCGAGG-GCa -3'
miRNA:   3'- -CGUCGAca---CGUGCaacUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 191620 0.69 0.931307
Target:  5'- uGCuguuuGCUGUGCGCGgcGAagCGAGcgaGAGCu -3'
miRNA:   3'- -CGu----CGACACGUGCaaCUg-GCUC---CUCG- -5'
13969 5' -54.4 NC_003521.1 + 118686 0.69 0.929791
Target:  5'- gGCGGCgGUaccGCugGUggagggcaggcucaUGGgCGAGGGGCg -3'
miRNA:   3'- -CGUCGaCA---CGugCA--------------ACUgGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 196692 0.69 0.926174
Target:  5'- cGCGGCUGuUGCGguagugGUUGGCC-AGGAuGCa -3'
miRNA:   3'- -CGUCGAC-ACGUg-----CAACUGGcUCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 117924 0.69 0.926173
Target:  5'- aCGGCgGUGCGCag-GACgGGGGAGg -3'
miRNA:   3'- cGUCGaCACGUGcaaCUGgCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 171420 0.69 0.926173
Target:  5'- aGCAGgaGgcuCACGgugcGAUUGAGGAGCa -3'
miRNA:   3'- -CGUCgaCac-GUGCaa--CUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 206124 0.69 0.924056
Target:  5'- uCAGCUGcUGCGCGaugcugagaacgGGCCGGGGAaagGCc -3'
miRNA:   3'- cGUCGAC-ACGUGCaa----------CUGGCUCCU---CG- -5'
13969 5' -54.4 NC_003521.1 + 165851 0.69 0.915217
Target:  5'- gGCAGgUGUGCugGcgGugCGAGuggaaguugaaGGGCa -3'
miRNA:   3'- -CGUCgACACGugCaaCugGCUC-----------CUCG- -5'
13969 5' -54.4 NC_003521.1 + 167912 0.69 0.915217
Target:  5'- gGCAGgUGggGCGCcgcGAUCGAGGGGUa -3'
miRNA:   3'- -CGUCgACa-CGUGcaaCUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 121825 0.69 0.911752
Target:  5'- gGUAGUgGUGCACGUUGAugUCGGGcacguucaccaucuuGAGCg -3'
miRNA:   3'- -CGUCGaCACGUGCAACU--GGCUC---------------CUCG- -5'
13969 5' -54.4 NC_003521.1 + 177755 0.69 0.909396
Target:  5'- cGCAGCUGUacggggucgcGguCGUcgccagGGCCGAcGGGGCc -3'
miRNA:   3'- -CGUCGACA----------CguGCAa-----CUGGCU-CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 91525 0.69 0.909396
Target:  5'- -gAGgUGgGCggaGCGUcGACCGGGGAGCc -3'
miRNA:   3'- cgUCgACaCG---UGCAaCUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 144898 0.69 0.909396
Target:  5'- uGCuGCgGgcccacgGCAUGccggUGGCCGAGGAGUu -3'
miRNA:   3'- -CGuCGaCa------CGUGCa---ACUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 90836 0.7 0.905794
Target:  5'- uGCGGCggGUGCGCGccgcccgUGcugcugcugaccacgGCCGAGGGGg -3'
miRNA:   3'- -CGUCGa-CACGUGCa------AC---------------UGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 33946 0.7 0.903348
Target:  5'- uGCGGC-GUGCGCGgcGAgCagcuGGAGCg -3'
miRNA:   3'- -CGUCGaCACGUGCaaCUgGcu--CCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.