miRNA display CGI


Results 101 - 120 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 172379 0.66 0.982264
Target:  5'- --uGCUGaccgGCACGc-GGuuGAGGGGCg -3'
miRNA:   3'- cguCGACa---CGUGCaaCUggCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 173657 0.67 0.970342
Target:  5'- gGCGGC--UGCGCGg-GACCcAGGGGUa -3'
miRNA:   3'- -CGUCGacACGUGCaaCUGGcUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 174670 0.67 0.967397
Target:  5'- uGUuGCUGcGCGCGcugcggGugCGAGGGGUc -3'
miRNA:   3'- -CGuCGACaCGUGCaa----CugGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 177545 0.72 0.822876
Target:  5'- aGCAGCUGcUGCACccgGucGCCGAGGAa- -3'
miRNA:   3'- -CGUCGAC-ACGUGcaaC--UGGCUCCUcg -5'
13969 5' -54.4 NC_003521.1 + 177755 0.69 0.909396
Target:  5'- cGCAGCUGUacggggucgcGguCGUcgccagGGCCGAcGGGGCc -3'
miRNA:   3'- -CGUCGACA----------CguGCAa-----CUGGCU-CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 180484 0.66 0.975652
Target:  5'- aGCgGGCUGcGCAgGUUGGCCGGcu-GCa -3'
miRNA:   3'- -CG-UCGACaCGUgCAACUGGCUccuCG- -5'
13969 5' -54.4 NC_003521.1 + 180660 0.66 0.980231
Target:  5'- aGCGGCUccagGCGUUGGCgCGAGGccuGCg -3'
miRNA:   3'- -CGUCGAcacgUGCAACUG-GCUCCu--CG- -5'
13969 5' -54.4 NC_003521.1 + 186407 0.68 0.945333
Target:  5'- gGCAGCaGUGCAgGUaGAUC-AGGuAGCa -3'
miRNA:   3'- -CGUCGaCACGUgCAaCUGGcUCC-UCG- -5'
13969 5' -54.4 NC_003521.1 + 186954 0.66 0.982264
Target:  5'- cGCAGCaggcacucGUaCACGccGGCCGAGGAcGCc -3'
miRNA:   3'- -CGUCGa-------CAcGUGCaaCUGGCUCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 190373 0.66 0.982264
Target:  5'- cGCGGCUuucgGCucCGUccaccGCUGAGGAGCg -3'
miRNA:   3'- -CGUCGAca--CGu-GCAac---UGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 190567 0.71 0.831155
Target:  5'- uGCAGCggcaGUACGgcgUGAUCGAGG-GCg -3'
miRNA:   3'- -CGUCGaca-CGUGCa--ACUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 191620 0.69 0.931307
Target:  5'- uGCuguuuGCUGUGCGCGgcGAagCGAGcgaGAGCu -3'
miRNA:   3'- -CGu----CGACACGUGCaaCUg-GCUC---CUCG- -5'
13969 5' -54.4 NC_003521.1 + 195170 0.7 0.903348
Target:  5'- aGCGGgUGUGCGCcg-GACCccgcGGAGCc -3'
miRNA:   3'- -CGUCgACACGUGcaaCUGGcu--CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 196672 0.66 0.984135
Target:  5'- cCAGCUGcUGCucgacgacgGCGUcGGagGAGGAGCa -3'
miRNA:   3'- cGUCGAC-ACG---------UGCAaCUggCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 196692 0.69 0.926174
Target:  5'- cGCGGCUGuUGCGguagugGUUGGCC-AGGAuGCa -3'
miRNA:   3'- -CGUCGAC-ACGUg-----CAACUGGcUCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 196949 0.67 0.960898
Target:  5'- gGUAGC-GUGgGCGacGGCCcGGGAGCc -3'
miRNA:   3'- -CGUCGaCACgUGCaaCUGGcUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 197608 0.67 0.964251
Target:  5'- uGCGGCgucugGUGCA-GcaGGCCGAuGAGCa -3'
miRNA:   3'- -CGUCGa----CACGUgCaaCUGGCUcCUCG- -5'
13969 5' -54.4 NC_003521.1 + 197785 0.73 0.751309
Target:  5'- cGCAGCUGUGC-CGUgaagaccagcUGGuuGAaGAGCg -3'
miRNA:   3'- -CGUCGACACGuGCA----------ACUggCUcCUCG- -5'
13969 5' -54.4 NC_003521.1 + 199594 0.67 0.967397
Target:  5'- cCAGCaGUGCugGUUG-CUGAGcacgaugaaGGGCa -3'
miRNA:   3'- cGUCGaCACGugCAACuGGCUC---------CUCG- -5'
13969 5' -54.4 NC_003521.1 + 200239 0.66 0.984135
Target:  5'- cGCAGCgagUGUgGCGCGUguuugccgUGGCCGGGaucgguGAGUc -3'
miRNA:   3'- -CGUCG---ACA-CGUGCA--------ACUGGCUC------CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.