miRNA display CGI


Results 81 - 100 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 120926 0.7 0.890581
Target:  5'- uGCGGCUGccCGCGgcGGCggcuccggCGAGGGGCa -3'
miRNA:   3'- -CGUCGACacGUGCaaCUG--------GCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 118686 0.69 0.929791
Target:  5'- gGCGGCgGUaccGCugGUggagggcaggcucaUGGgCGAGGGGCg -3'
miRNA:   3'- -CGUCGaCA---CGugCA--------------ACUgGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 117924 0.69 0.926173
Target:  5'- aCGGCgGUGCGCag-GACgGGGGAGg -3'
miRNA:   3'- cGUCGaCACGUGcaaCUGgCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 111776 0.66 0.977568
Target:  5'- aGguGCUGcGCGCGcucaagaacacGGCCGAcgccauGGAGCg -3'
miRNA:   3'- -CguCGACaCGUGCaa---------CUGGCU------CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 110482 0.72 0.79707
Target:  5'- uGCGGCc--GCACGUUGAgcCCGAaGAGCa -3'
miRNA:   3'- -CGUCGacaCGUGCAACU--GGCUcCUCG- -5'
13969 5' -54.4 NC_003521.1 + 109677 0.68 0.936211
Target:  5'- aGCGGCgGaUGCGauc-GGCCGAGGGGUc -3'
miRNA:   3'- -CGUCGaC-ACGUgcaaCUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 106558 0.73 0.769053
Target:  5'- aGCAGCUGcagaaccUGCACcggGUcacccUGGCCGAGG-GCg -3'
miRNA:   3'- -CGUCGAC-------ACGUG---CA-----ACUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 105975 0.66 0.975652
Target:  5'- cGCAGCgugaagaagccGUGUuCGUUGGgCG-GGGGCa -3'
miRNA:   3'- -CGUCGa----------CACGuGCAACUgGCuCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 102659 0.66 0.982264
Target:  5'- aGCGGCUGUcggGCACGUgcuUGAgcaggUCGaAGGGGa -3'
miRNA:   3'- -CGUCGACA---CGUGCA---ACU-----GGC-UCCUCg -5'
13969 5' -54.4 NC_003521.1 + 102318 0.67 0.973091
Target:  5'- cGCGGCaucgucgucGUGCGCGUgggcgccgacGCCGGGGuGGCg -3'
miRNA:   3'- -CGUCGa--------CACGUGCAac--------UGGCUCC-UCG- -5'
13969 5' -54.4 NC_003521.1 + 100890 0.68 0.936211
Target:  5'- -gAGCUGgccuuccgGC-CGUgccCCGAGGAGCa -3'
miRNA:   3'- cgUCGACa-------CGuGCAacuGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 100367 0.68 0.953554
Target:  5'- cGCGGacggGUgacggggacgGCACGgaGGCCGGGGAGa -3'
miRNA:   3'- -CGUCga--CA----------CGUGCaaCUGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 100129 0.72 0.814431
Target:  5'- cGCGGCUGgcgGUccuGCGggaaGGCCGuGGGGCu -3'
miRNA:   3'- -CGUCGACa--CG---UGCaa--CUGGCuCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 99896 0.66 0.975652
Target:  5'- aGgGGUcGUGCGgGUUGACCGGuagcccguGGAGg -3'
miRNA:   3'- -CgUCGaCACGUgCAACUGGCU--------CCUCg -5'
13969 5' -54.4 NC_003521.1 + 95554 0.68 0.940885
Target:  5'- cGCgAGCUG-GC-CGccgaGGCCGAGGAGg -3'
miRNA:   3'- -CG-UCGACaCGuGCaa--CUGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 92044 0.69 0.931307
Target:  5'- cGCGGCUccucgGCGCGaccGCCGAGG-GCa -3'
miRNA:   3'- -CGUCGAca---CGUGCaacUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 91970 0.71 0.829513
Target:  5'- cGUAGCUggcgcgGUGCACGgcacgcaccucGGCCGAGG-GCa -3'
miRNA:   3'- -CGUCGA------CACGUGCaa---------CUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 91525 0.69 0.909396
Target:  5'- -gAGgUGgGCggaGCGUcGACCGGGGAGCc -3'
miRNA:   3'- cgUCgACaCG---UGCAaCUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 90836 0.7 0.905794
Target:  5'- uGCGGCggGUGCGCGccgcccgUGcugcugcugaccacgGCCGAGGGGg -3'
miRNA:   3'- -CGUCGa-CACGUGCa------AC---------------UGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 89628 0.7 0.903348
Target:  5'- cGUGGUgGUGaC-CGUcgcGGCCGAGGAGCa -3'
miRNA:   3'- -CGUCGaCAC-GuGCAa--CUGGCUCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.