Results 61 - 80 of 140 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 171420 | 0.69 | 0.926173 |
Target: 5'- aGCAGgaGgcuCACGgugcGAUUGAGGAGCa -3' miRNA: 3'- -CGUCgaCac-GUGCaa--CUGGCUCCUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 91525 | 0.69 | 0.909396 |
Target: 5'- -gAGgUGgGCggaGCGUcGACCGGGGAGCc -3' miRNA: 3'- cgUCgACaCG---UGCAaCUGGCUCCUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 144898 | 0.69 | 0.909396 |
Target: 5'- uGCuGCgGgcccacgGCAUGccggUGGCCGAGGAGUu -3' miRNA: 3'- -CGuCGaCa------CGUGCa---ACUGGCUCCUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 121825 | 0.69 | 0.911752 |
Target: 5'- gGUAGUgGUGCACGUUGAugUCGGGcacguucaccaucuuGAGCg -3' miRNA: 3'- -CGUCGaCACGUGCAACU--GGCUC---------------CUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 167912 | 0.69 | 0.915217 |
Target: 5'- gGCAGgUGggGCGCcgcGAUCGAGGGGUa -3' miRNA: 3'- -CGUCgACa-CGUGcaaCUGGCUCCUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 206124 | 0.69 | 0.924056 |
Target: 5'- uCAGCUGcUGCGCGaugcugagaacgGGCCGGGGAaagGCc -3' miRNA: 3'- cGUCGAC-ACGUGCaa----------CUGGCUCCU---CG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 117924 | 0.69 | 0.926173 |
Target: 5'- aCGGCgGUGCGCag-GACgGGGGAGg -3' miRNA: 3'- cGUCGaCACGUGcaaCUGgCUCCUCg -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 68191 | 0.72 | 0.814431 |
Target: 5'- -aAGCggggGCGCGUgagGACCGAGGAcGUg -3' miRNA: 3'- cgUCGaca-CGUGCAa--CUGGCUCCU-CG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 208861 | 0.72 | 0.805826 |
Target: 5'- uGCGGCUGgacgGCACcauGUgccuguuccUGGaccCCGAGGAGCg -3' miRNA: 3'- -CGUCGACa---CGUG---CA---------ACU---GGCUCCUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 110482 | 0.72 | 0.79707 |
Target: 5'- uGCGGCc--GCACGUUGAgcCCGAaGAGCa -3' miRNA: 3'- -CGUCGacaCGUGCAACU--GGCUcCUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 106558 | 0.73 | 0.769053 |
Target: 5'- aGCAGCUGcagaaccUGCACcggGUcacccUGGCCGAGG-GCg -3' miRNA: 3'- -CGUCGAC-------ACGUG---CA-----ACUGGCUCCuCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 197785 | 0.73 | 0.751309 |
Target: 5'- cGCAGCUGUGC-CGUgaagaccagcUGGuuGAaGAGCg -3' miRNA: 3'- -CGUCGACACGuGCA----------ACUggCUcCUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 136030 | 0.73 | 0.741819 |
Target: 5'- uCAGCgagGUG-GCGgUGAUCGAGGGGCa -3' miRNA: 3'- cGUCGa--CACgUGCaACUGGCUCCUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 17154 | 0.74 | 0.693165 |
Target: 5'- aGCAGCg--GCGCGa-GGCCGAGGcGCa -3' miRNA: 3'- -CGUCGacaCGUGCaaCUGGCUCCuCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 14760 | 0.75 | 0.633248 |
Target: 5'- cGCGGCcGggGCGCGccuucgUGGCCGAGGuGCu -3' miRNA: 3'- -CGUCGaCa-CGUGCa-----ACUGGCUCCuCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 86866 | 0.76 | 0.580228 |
Target: 5'- uGCAagacGCUGUucgacaccaugacgGCGCGgcgggUGGCCGAGGAGUg -3' miRNA: 3'- -CGU----CGACA--------------CGUGCa----ACUGGCUCCUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 38469 | 0.77 | 0.563386 |
Target: 5'- gGCGGCcGUGgGaCGUUGACCaGAGGAGg -3' miRNA: 3'- -CGUCGaCACgU-GCAACUGG-CUCCUCg -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 87260 | 0.77 | 0.537897 |
Target: 5'- aGCGGCUGUGCGcCGUgcgcguggccaacgGGcCCGAGGuGCg -3' miRNA: 3'- -CGUCGACACGU-GCAa-------------CU-GGCUCCuCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 46378 | 0.81 | 0.365388 |
Target: 5'- cGCGGCUGUgagggGCGCGggGugCGuGGGGCg -3' miRNA: 3'- -CGUCGACA-----CGUGCaaCugGCuCCUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 88017 | 0.65 | 0.985688 |
Target: 5'- -gAGCUGUaccaccuGC-CGgUGACCGAGGcgguGCg -3' miRNA: 3'- cgUCGACA-------CGuGCaACUGGCUCCu---CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home