Results 101 - 120 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 17154 | 0.74 | 0.693165 |
Target: 5'- aGCAGCg--GCGCGa-GGCCGAGGcGCa -3' miRNA: 3'- -CGUCGacaCGUGCaaCUGGCUCCuCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 14760 | 0.75 | 0.633248 |
Target: 5'- cGCGGCcGggGCGCGccuucgUGGCCGAGGuGCu -3' miRNA: 3'- -CGUCGaCa-CGUGCa-----ACUGGCUCCuCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 86866 | 0.76 | 0.580228 |
Target: 5'- uGCAagacGCUGUucgacaccaugacgGCGCGgcgggUGGCCGAGGAGUg -3' miRNA: 3'- -CGU----CGACA--------------CGUGCa----ACUGGCUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 38469 | 0.77 | 0.563386 |
Target: 5'- gGCGGCcGUGgGaCGUUGACCaGAGGAGg -3' miRNA: 3'- -CGUCGaCACgU-GCAACUGG-CUCCUCg -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 87260 | 0.77 | 0.537897 |
Target: 5'- aGCGGCUGUGCGcCGUgcgcguggccaacgGGcCCGAGGuGCg -3' miRNA: 3'- -CGUCGACACGU-GCAa-------------CU-GGCUCCuCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 46378 | 0.81 | 0.365388 |
Target: 5'- cGCGGCUGUgagggGCGCGggGugCGuGGGGCg -3' miRNA: 3'- -CGUCGACA-----CGUGCaaCugGCuCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 68191 | 0.72 | 0.814431 |
Target: 5'- -aAGCggggGCGCGUgagGACCGAGGAcGUg -3' miRNA: 3'- cgUCGaca-CGUGCAa--CUGGCUCCU-CG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 177545 | 0.72 | 0.822876 |
Target: 5'- aGCAGCUGcUGCACccgGucGCCGAGGAa- -3' miRNA: 3'- -CGUCGAC-ACGUGcaaC--UGGCUCCUcg -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 91970 | 0.71 | 0.829513 |
Target: 5'- cGUAGCUggcgcgGUGCACGgcacgcaccucGGCCGAGG-GCa -3' miRNA: 3'- -CGUCGA------CACGUGCaa---------CUGGCUCCuCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 165851 | 0.69 | 0.915217 |
Target: 5'- gGCAGgUGUGCugGcgGugCGAGuggaaguugaaGGGCa -3' miRNA: 3'- -CGUCgACACGugCaaCugGCUC-----------CUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 177755 | 0.69 | 0.909396 |
Target: 5'- cGCAGCUGUacggggucgcGguCGUcgccagGGCCGAcGGGGCc -3' miRNA: 3'- -CGUCGACA----------CguGCAa-----CUGGCU-CCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 90836 | 0.7 | 0.905794 |
Target: 5'- uGCGGCggGUGCGCGccgcccgUGcugcugcugaccacgGCCGAGGGGg -3' miRNA: 3'- -CGUCGa-CACGUGCa------AC---------------UGGCUCCUCg -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 33946 | 0.7 | 0.903348 |
Target: 5'- uGCGGC-GUGCGCGgcGAgCagcuGGAGCg -3' miRNA: 3'- -CGUCGaCACGUGCaaCUgGcu--CCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 195170 | 0.7 | 0.903348 |
Target: 5'- aGCGGgUGUGCGCcg-GACCccgcGGAGCc -3' miRNA: 3'- -CGUCgACACGUGcaaCUGGcu--CCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 89628 | 0.7 | 0.903348 |
Target: 5'- cGUGGUgGUGaC-CGUcgcGGCCGAGGAGCa -3' miRNA: 3'- -CGUCGaCAC-GuGCAa--CUGGCUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 221645 | 0.7 | 0.897076 |
Target: 5'- uGCAGCUcGUGCACGUcGGCCacc-AGCg -3' miRNA: 3'- -CGUCGA-CACGUGCAaCUGGcuccUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 148382 | 0.7 | 0.890581 |
Target: 5'- -gAGCgggGUGCGgGgaGGCUGGGGGGUg -3' miRNA: 3'- cgUCGa--CACGUgCaaCUGGCUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 156885 | 0.7 | 0.883869 |
Target: 5'- gGCGGCcGcUGCcCGaUGGCaCGGGGGGCg -3' miRNA: 3'- -CGUCGaC-ACGuGCaACUG-GCUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 76533 | 0.7 | 0.869804 |
Target: 5'- uGUGGCUGcUGCuGCGgUGGCUGuccAGGAGCg -3' miRNA: 3'- -CGUCGAC-ACG-UGCaACUGGC---UCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 190567 | 0.71 | 0.831155 |
Target: 5'- uGCAGCggcaGUACGgcgUGAUCGAGG-GCg -3' miRNA: 3'- -CGUCGaca-CGUGCa--ACUGGCUCCuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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