miRNA display CGI


Results 121 - 140 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 46378 0.81 0.365388
Target:  5'- cGCGGCUGUgagggGCGCGggGugCGuGGGGCg -3'
miRNA:   3'- -CGUCGACA-----CGUGCaaCugGCuCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 156885 0.7 0.883869
Target:  5'- gGCGGCcGcUGCcCGaUGGCaCGGGGGGCg -3'
miRNA:   3'- -CGUCGaC-ACGuGCaACUG-GCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 148382 0.7 0.890581
Target:  5'- -gAGCgggGUGCGgGgaGGCUGGGGGGUg -3'
miRNA:   3'- cgUCGa--CACGUgCaaCUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 86442 0.68 0.945333
Target:  5'- -uGGCg--GCAgCGgcGACCGAGGAcGCg -3'
miRNA:   3'- cgUCGacaCGU-GCaaCUGGCUCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 208528 0.68 0.940885
Target:  5'- cGCAGCUGU-CugGcccauucGGCCGAGGucacGGCu -3'
miRNA:   3'- -CGUCGACAcGugCaa-----CUGGCUCC----UCG- -5'
13969 5' -54.4 NC_003521.1 + 95554 0.68 0.940885
Target:  5'- cGCgAGCUG-GC-CGccgaGGCCGAGGAGg -3'
miRNA:   3'- -CG-UCGACaCGuGCaa--CUGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 233386 0.68 0.940885
Target:  5'- uGguGCUGUGCgccGCGUccgUGAUgGAacacaGGGGCa -3'
miRNA:   3'- -CguCGACACG---UGCA---ACUGgCU-----CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 109677 0.68 0.936211
Target:  5'- aGCGGCgGaUGCGauc-GGCCGAGGGGUc -3'
miRNA:   3'- -CGUCGaC-ACGUgcaaCUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 87161 0.68 0.936211
Target:  5'- cGCAGUUcGUGCGCGc-GGCCGuGcAGCg -3'
miRNA:   3'- -CGUCGA-CACGUGCaaCUGGCuCcUCG- -5'
13969 5' -54.4 NC_003521.1 + 100890 0.68 0.936211
Target:  5'- -gAGCUGgccuuccgGC-CGUgccCCGAGGAGCa -3'
miRNA:   3'- cgUCGACa-------CGuGCAacuGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 92044 0.69 0.931307
Target:  5'- cGCGGCUccucgGCGCGaccGCCGAGG-GCa -3'
miRNA:   3'- -CGUCGAca---CGUGCaacUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 196692 0.69 0.926174
Target:  5'- cGCGGCUGuUGCGguagugGUUGGCC-AGGAuGCa -3'
miRNA:   3'- -CGUCGAC-ACGUg-----CAACUGGcUCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 165851 0.69 0.915217
Target:  5'- gGCAGgUGUGCugGcgGugCGAGuggaaguugaaGGGCa -3'
miRNA:   3'- -CGUCgACACGugCaaCugGCUC-----------CUCG- -5'
13969 5' -54.4 NC_003521.1 + 177755 0.69 0.909396
Target:  5'- cGCAGCUGUacggggucgcGguCGUcgccagGGCCGAcGGGGCc -3'
miRNA:   3'- -CGUCGACA----------CguGCAa-----CUGGCU-CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 90836 0.7 0.905794
Target:  5'- uGCGGCggGUGCGCGccgcccgUGcugcugcugaccacgGCCGAGGGGg -3'
miRNA:   3'- -CGUCGa-CACGUGCa------AC---------------UGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 33946 0.7 0.903348
Target:  5'- uGCGGC-GUGCGCGgcGAgCagcuGGAGCg -3'
miRNA:   3'- -CGUCGaCACGUGCaaCUgGcu--CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 195170 0.7 0.903348
Target:  5'- aGCGGgUGUGCGCcg-GACCccgcGGAGCc -3'
miRNA:   3'- -CGUCgACACGUGcaaCUGGcu--CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 89628 0.7 0.903348
Target:  5'- cGUGGUgGUGaC-CGUcgcGGCCGAGGAGCa -3'
miRNA:   3'- -CGUCGaCAC-GuGCAa--CUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 221645 0.7 0.897076
Target:  5'- uGCAGCUcGUGCACGUcGGCCacc-AGCg -3'
miRNA:   3'- -CGUCGA-CACGUGCAaCUGGcuccUCG- -5'
13969 5' -54.4 NC_003521.1 + 208828 1.13 0.003439
Target:  5'- gGCAGCUGUGCACGUUGACCGAGGAGCu -3'
miRNA:   3'- -CGUCGACACGUGCAACUGGCUCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.