miRNA display CGI


Results 81 - 100 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 191620 0.69 0.931307
Target:  5'- uGCuguuuGCUGUGCGCGgcGAagCGAGcgaGAGCu -3'
miRNA:   3'- -CGu----CGACACGUGCaaCUg-GCUC---CUCG- -5'
13969 5' -54.4 NC_003521.1 + 118686 0.69 0.929791
Target:  5'- gGCGGCgGUaccGCugGUggagggcaggcucaUGGgCGAGGGGCg -3'
miRNA:   3'- -CGUCGaCA---CGugCA--------------ACUgGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 171420 0.69 0.926173
Target:  5'- aGCAGgaGgcuCACGgugcGAUUGAGGAGCa -3'
miRNA:   3'- -CGUCgaCac-GUGCaa--CUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 117924 0.69 0.926173
Target:  5'- aCGGCgGUGCGCag-GACgGGGGAGg -3'
miRNA:   3'- cGUCGaCACGUGcaaCUGgCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 151250 0.7 0.876941
Target:  5'- cGCGGcCUG-GgACGgcGACgaCGAGGAGCg -3'
miRNA:   3'- -CGUC-GACaCgUGCaaCUG--GCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 31711 0.7 0.876941
Target:  5'- gGCAGCaUGUGCGCGU--GCUG-GGAcGCc -3'
miRNA:   3'- -CGUCG-ACACGUGCAacUGGCuCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 167103 0.66 0.978029
Target:  5'- -gGGCca-GC-CGggGACUGAGGAGCc -3'
miRNA:   3'- cgUCGacaCGuGCaaCUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 170189 0.66 0.978029
Target:  5'- aGCGGUgGUGC-CGguggagguagUGGCaCGAGGGGUc -3'
miRNA:   3'- -CGUCGaCACGuGCa---------ACUG-GCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 209564 0.66 0.978029
Target:  5'- gGCGGCgacgGUG-GCGggGGuCCGGGGGcGCa -3'
miRNA:   3'- -CGUCGa---CACgUGCaaCU-GGCUCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 150628 0.66 0.982264
Target:  5'- gGCGGCUGcUGCGCa--GGCgGGGGcguGCg -3'
miRNA:   3'- -CGUCGAC-ACGUGcaaCUGgCUCCu--CG- -5'
13969 5' -54.4 NC_003521.1 + 148878 0.66 0.982264
Target:  5'- cCAGcCUGgccucgGC-CGUggccgacGCCGAGGAGCg -3'
miRNA:   3'- cGUC-GACa-----CGuGCAac-----UGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 236476 0.66 0.982264
Target:  5'- aGCGGCgaaccgGUcCGUccgaGACCGAGGAGg -3'
miRNA:   3'- -CGUCGaca---CGuGCAa---CUGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 102659 0.66 0.982264
Target:  5'- aGCGGCUGUcggGCACGUgcuUGAgcaggUCGaAGGGGa -3'
miRNA:   3'- -CGUCGACA---CGUGCA---ACU-----GGC-UCCUCg -5'
13969 5' -54.4 NC_003521.1 + 60547 0.66 0.98187
Target:  5'- uGCuGCUcaacGUGCGCGccuacuucccccUGcgguacACCGAGGAGCa -3'
miRNA:   3'- -CGuCGA----CACGUGCa-----------AC------UGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 79196 0.66 0.981671
Target:  5'- gGUGGCgccgaagaaacgcaGCACGUUGcCCGAGG-GCa -3'
miRNA:   3'- -CGUCGaca-----------CGUGCAACuGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 38814 0.66 0.980231
Target:  5'- cGCAGCagGUGuCAagguagguuuaGUUGACUGugcguaAGGAGCg -3'
miRNA:   3'- -CGUCGa-CAC-GUg----------CAACUGGC------UCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 20157 0.66 0.980231
Target:  5'- cGCGGCUcaGCAUGgcgaagGACagaGGGAGCg -3'
miRNA:   3'- -CGUCGAcaCGUGCaa----CUGgc-UCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 12913 0.66 0.980231
Target:  5'- aCAGcCUGgcGCugGUggcggGACCagggccggGAGGAGCa -3'
miRNA:   3'- cGUC-GACa-CGugCAa----CUGG--------CUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 17012 0.66 0.980231
Target:  5'- aGgAGCUGcUGCAacaGcgGGaaGAGGAGCg -3'
miRNA:   3'- -CgUCGAC-ACGUg--CaaCUggCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 224770 0.66 0.97893
Target:  5'- gGCAGUUGUGCagcagcgcccgcaccACGUcGugCG-GGAcGCg -3'
miRNA:   3'- -CGUCGACACG---------------UGCAaCugGCuCCU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.