miRNA display CGI


Results 101 - 120 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 20157 0.66 0.980231
Target:  5'- cGCGGCUcaGCAUGgcgaagGACagaGGGAGCg -3'
miRNA:   3'- -CGUCGAcaCGUGCaa----CUGgc-UCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 38814 0.66 0.980231
Target:  5'- cGCAGCagGUGuCAagguagguuuaGUUGACUGugcguaAGGAGCg -3'
miRNA:   3'- -CGUCGa-CAC-GUg----------CAACUGGC------UCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 186954 0.66 0.982264
Target:  5'- cGCAGCaggcacucGUaCACGccGGCCGAGGAcGCc -3'
miRNA:   3'- -CGUCGa-------CAcGUGCaaCUGGCUCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 150628 0.66 0.982264
Target:  5'- gGCGGCUGcUGCGCa--GGCgGGGGcguGCg -3'
miRNA:   3'- -CGUCGAC-ACGUGcaaCUGgCUCCu--CG- -5'
13969 5' -54.4 NC_003521.1 + 79196 0.66 0.981671
Target:  5'- gGUGGCgccgaagaaacgcaGCACGUUGcCCGAGG-GCa -3'
miRNA:   3'- -CGUCGaca-----------CGUGCAACuGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 236476 0.66 0.982264
Target:  5'- aGCGGCgaaccgGUcCGUccgaGACCGAGGAGg -3'
miRNA:   3'- -CGUCGaca---CGuGCAa---CUGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 88524 0.66 0.978029
Target:  5'- cGCAGCcGUGCAgGcgcACCGAaacggccuccucGGGGCa -3'
miRNA:   3'- -CGUCGaCACGUgCaacUGGCU------------CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 60547 0.66 0.98187
Target:  5'- uGCuGCUcaacGUGCGCGccuacuucccccUGcgguacACCGAGGAGCa -3'
miRNA:   3'- -CGuCGA----CACGUGCa-----------AC------UGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 12364 0.68 0.945333
Target:  5'- aGCAGCUucuggGUGC-CGUUGugCcaacuauGGGGCg -3'
miRNA:   3'- -CGUCGA-----CACGuGCAACugGcu-----CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 166420 0.68 0.953164
Target:  5'- cGCGGCacagGUcguccacGCACGUguaGAUCGAGG-GCg -3'
miRNA:   3'- -CGUCGa---CA-------CGUGCAa--CUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 165950 0.68 0.953554
Target:  5'- aGCAGCgccgugucGUGCuCGggcaGGCUGAGGaAGCg -3'
miRNA:   3'- -CGUCGa-------CACGuGCaa--CUGGCUCC-UCG- -5'
13969 5' -54.4 NC_003521.1 + 126544 0.67 0.967397
Target:  5'- cCAGCUgugguacucGUGCGCGaaGGCCGuGGGcAGCg -3'
miRNA:   3'- cGUCGA---------CACGUGCaaCUGGC-UCC-UCG- -5'
13969 5' -54.4 NC_003521.1 + 240103 0.67 0.970342
Target:  5'- -gGGUUGUGCACGUUG---GGGuGGGCg -3'
miRNA:   3'- cgUCGACACGUGCAACuggCUC-CUCG- -5'
13969 5' -54.4 NC_003521.1 + 102318 0.67 0.973091
Target:  5'- cGCGGCaucgucgucGUGCGCGUgggcgccgacGCCGGGGuGGCg -3'
miRNA:   3'- -CGUCGa--------CACGUGCAac--------UGGCUCC-UCG- -5'
13969 5' -54.4 NC_003521.1 + 19667 0.66 0.975652
Target:  5'- gGCAGgUG-GCGCcagaGACCGAGGAa- -3'
miRNA:   3'- -CGUCgACaCGUGcaa-CUGGCUCCUcg -5'
13969 5' -54.4 NC_003521.1 + 99896 0.66 0.975652
Target:  5'- aGgGGUcGUGCGgGUUGACCGGuagcccguGGAGg -3'
miRNA:   3'- -CgUCGaCACGUgCAACUGGCU--------CCUCg -5'
13969 5' -54.4 NC_003521.1 + 126494 0.66 0.975652
Target:  5'- uGCAGCacguUGggGCAgG-UGGCCGAGuAGCg -3'
miRNA:   3'- -CGUCG----ACa-CGUgCaACUGGCUCcUCG- -5'
13969 5' -54.4 NC_003521.1 + 105975 0.66 0.975652
Target:  5'- cGCAGCgugaagaagccGUGUuCGUUGGgCG-GGGGCa -3'
miRNA:   3'- -CGUCGa----------CACGuGCAACUgGCuCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 155426 0.66 0.978029
Target:  5'- aGgAGCUGUGCGaGcUGGCCGAcccgcuGGGCg -3'
miRNA:   3'- -CgUCGACACGUgCaACUGGCUc-----CUCG- -5'
13969 5' -54.4 NC_003521.1 + 170523 0.66 0.975652
Target:  5'- aCGGCgUGUG-ACGggGA-CGGGGGGCa -3'
miRNA:   3'- cGUCG-ACACgUGCaaCUgGCUCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.