miRNA display CGI


Results 121 - 140 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 196672 0.66 0.984135
Target:  5'- cCAGCUGcUGCucgacgacgGCGUcGGagGAGGAGCa -3'
miRNA:   3'- cGUCGAC-ACG---------UGCAaCUggCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 200239 0.66 0.984135
Target:  5'- cGCAGCgagUGUgGCGCGUguuugccgUGGCCGGGaucgguGAGUc -3'
miRNA:   3'- -CGUCG---ACA-CGUGCA--------ACUGGCUC------CUCG- -5'
13969 5' -54.4 NC_003521.1 + 209564 0.66 0.978029
Target:  5'- gGCGGCgacgGUG-GCGggGGuCCGGGGGcGCa -3'
miRNA:   3'- -CGUCGa---CACgUGCaaCU-GGCUCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 170189 0.66 0.978029
Target:  5'- aGCGGUgGUGC-CGguggagguagUGGCaCGAGGGGUc -3'
miRNA:   3'- -CGUCGaCACGuGCa---------ACUG-GCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 134213 0.67 0.964251
Target:  5'- aGC-GCUgGUGC-CGcUUGGCCGAGuAGCu -3'
miRNA:   3'- -CGuCGA-CACGuGC-AACUGGCUCcUCG- -5'
13969 5' -54.4 NC_003521.1 + 202112 0.67 0.964251
Target:  5'- cGCAGCUG-GCGCag-GuACCGGGacGGGCu -3'
miRNA:   3'- -CGUCGACaCGUGcaaC-UGGCUC--CUCG- -5'
13969 5' -54.4 NC_003521.1 + 80140 0.67 0.966163
Target:  5'- uGCGGCcggUGcUGCGCGUccagccgcuggagGGCC-AGGAGCa -3'
miRNA:   3'- -CGUCG---AC-ACGUGCAa------------CUGGcUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 126544 0.67 0.967397
Target:  5'- cCAGCUgugguacucGUGCGCGaaGGCCGuGGGcAGCg -3'
miRNA:   3'- cGUCGA---------CACGUGCaaCUGGC-UCC-UCG- -5'
13969 5' -54.4 NC_003521.1 + 240103 0.67 0.970342
Target:  5'- -gGGUUGUGCACGUUG---GGGuGGGCg -3'
miRNA:   3'- cgUCGACACGUGCAACuggCUC-CUCG- -5'
13969 5' -54.4 NC_003521.1 + 102318 0.67 0.973091
Target:  5'- cGCGGCaucgucgucGUGCGCGUgggcgccgacGCCGGGGuGGCg -3'
miRNA:   3'- -CGUCGa--------CACGUGCAac--------UGGCUCC-UCG- -5'
13969 5' -54.4 NC_003521.1 + 19667 0.66 0.975652
Target:  5'- gGCAGgUG-GCGCcagaGACCGAGGAa- -3'
miRNA:   3'- -CGUCgACaCGUGcaa-CUGGCUCCUcg -5'
13969 5' -54.4 NC_003521.1 + 99896 0.66 0.975652
Target:  5'- aGgGGUcGUGCGgGUUGACCGGuagcccguGGAGg -3'
miRNA:   3'- -CgUCGaCACGUgCAACUGGCU--------CCUCg -5'
13969 5' -54.4 NC_003521.1 + 126494 0.66 0.975652
Target:  5'- uGCAGCacguUGggGCAgG-UGGCCGAGuAGCg -3'
miRNA:   3'- -CGUCG----ACa-CGUgCaACUGGCUCcUCG- -5'
13969 5' -54.4 NC_003521.1 + 105975 0.66 0.975652
Target:  5'- cGCAGCgugaagaagccGUGUuCGUUGGgCG-GGGGCa -3'
miRNA:   3'- -CGUCGa----------CACGuGCAACUgGCuCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 170523 0.66 0.975652
Target:  5'- aCGGCgUGUG-ACGggGA-CGGGGGGCa -3'
miRNA:   3'- cGUCG-ACACgUGCaaCUgGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 155426 0.66 0.978029
Target:  5'- aGgAGCUGUGCGaGcUGGCCGAcccgcuGGGCg -3'
miRNA:   3'- -CgUCGACACGUgCaACUGGCUc-----CUCG- -5'
13969 5' -54.4 NC_003521.1 + 88524 0.66 0.978029
Target:  5'- cGCAGCcGUGCAgGcgcACCGAaacggccuccucGGGGCa -3'
miRNA:   3'- -CGUCGaCACGUgCaacUGGCU------------CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 165871 0.66 0.978029
Target:  5'- cCAGCgGUGCACGU--GCuCGGGcGGCg -3'
miRNA:   3'- cGUCGaCACGUGCAacUG-GCUCcUCG- -5'
13969 5' -54.4 NC_003521.1 + 167103 0.66 0.978029
Target:  5'- -gGGCca-GC-CGggGACUGAGGAGCc -3'
miRNA:   3'- cgUCGacaCGuGCaaCUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 134212 0.67 0.964251
Target:  5'- -aAGCgcugGUGC-CGcUUGGCCGAGuAGCu -3'
miRNA:   3'- cgUCGa---CACGuGC-AACUGGCUCcUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.