miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 5' -62.8 NC_003521.1 + 142562 0.66 0.720575
Target:  5'- uCGcCCGCcaGGcuCGCCGUGCCCGCc- -3'
miRNA:   3'- -GC-GGCGaaCCacGUGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 224528 0.66 0.720575
Target:  5'- aGCCGCcgGGccgguagGCACCccgGCGCCCaGCa- -3'
miRNA:   3'- gCGGCGaaCCa------CGUGG---CGCGGG-CGau -5'
13970 5' -62.8 NC_003521.1 + 171528 0.66 0.692411
Target:  5'- gCGCCGCccugugucgGG-GCugCGCGCUgGUUAa -3'
miRNA:   3'- -GCGGCGaa-------CCaCGugGCGCGGgCGAU- -5'
13970 5' -62.8 NC_003521.1 + 179215 0.66 0.701853
Target:  5'- cCGuCCG-UUGGaGCGCUGCGCCCcCUGc -3'
miRNA:   3'- -GC-GGCgAACCaCGUGGCGCGGGcGAU- -5'
13970 5' -62.8 NC_003521.1 + 206298 0.66 0.711244
Target:  5'- uCGCCGCUcGcGcgucucgGC-CCGCGgCCGCUAc -3'
miRNA:   3'- -GCGGCGAaC-Ca------CGuGGCGCgGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 185743 0.66 0.681974
Target:  5'- uCGCCGagcgGGUGCGCCggaGCGCcuaggggCCGCg- -3'
miRNA:   3'- -GCGGCgaa-CCACGUGG---CGCG-------GGCGau -5'
13970 5' -62.8 NC_003521.1 + 110320 0.66 0.682925
Target:  5'- aGCCGCa-GG-GCcaucaugacgcgGCCGCGCUCGCg- -3'
miRNA:   3'- gCGGCGaaCCaCG------------UGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 6708 0.66 0.681974
Target:  5'- gCGCUGCUgggucucgccgUGGUGCagggccugacgcaGCCaGCGCUCGCc- -3'
miRNA:   3'- -GCGGCGA-----------ACCACG-------------UGG-CGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 200116 0.66 0.673402
Target:  5'- gCGCCGCgaugUGGUGCAUCuCaCCgGCUu -3'
miRNA:   3'- -GCGGCGa---ACCACGUGGcGcGGgCGAu -5'
13970 5' -62.8 NC_003521.1 + 173007 0.66 0.717782
Target:  5'- uGCCGCUgcacgcggaugcuuUGGaGCA-CGCGCUCGCc- -3'
miRNA:   3'- gCGGCGA--------------ACCaCGUgGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 197343 0.66 0.711244
Target:  5'- cCGCCGCggccagcacGGc-CGCCGCgcugGCCCGCUGu -3'
miRNA:   3'- -GCGGCGaa-------CCacGUGGCG----CGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 14947 0.66 0.682925
Target:  5'- gCGCCagacgcGCaUGGaGCACCGCaccuguGCCCGCa- -3'
miRNA:   3'- -GCGG------CGaACCaCGUGGCG------CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 157971 0.67 0.606298
Target:  5'- aCGgCGC-UGGUaGCgacGCCGcCGCCCGCg- -3'
miRNA:   3'- -GCgGCGaACCA-CG---UGGC-GCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 74660 0.67 0.625482
Target:  5'- gCGCCGCUcg--GCcCUGCGCUCGCUc -3'
miRNA:   3'- -GCGGCGAaccaCGuGGCGCGGGCGAu -5'
13970 5' -62.8 NC_003521.1 + 216820 0.67 0.60534
Target:  5'- aCGCCGgaUGGcGCGCaggagguCGCaGCCCGCg- -3'
miRNA:   3'- -GCGGCgaACCaCGUG-------GCG-CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 8464 0.67 0.615884
Target:  5'- -uCCGCUUcgcGGUGcCGCCGCGaCUGCUGc -3'
miRNA:   3'- gcGGCGAA---CCAC-GUGGCGCgGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 152296 0.67 0.615884
Target:  5'- gGCCGUUUcGGUGCGCC-UGCaCgGCUGc -3'
miRNA:   3'- gCGGCGAA-CCACGUGGcGCG-GgCGAU- -5'
13970 5' -62.8 NC_003521.1 + 148418 0.67 0.635083
Target:  5'- aGCCa--UGGUGCgggcgGCCGCGCCgGCg- -3'
miRNA:   3'- gCGGcgaACCACG-----UGGCGCGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 171404 0.67 0.624521
Target:  5'- -aCCGUggUGGUGCGcgccgucaccgucCCGCGUCUGCUGc -3'
miRNA:   3'- gcGGCGa-ACCACGU-------------GGCGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 77636 0.67 0.625482
Target:  5'- cCGCCGCcac---CACCGUGUCCGCUGc -3'
miRNA:   3'- -GCGGCGaaccacGUGGCGCGGGCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.