miRNA display CGI


Results 61 - 80 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 5' -62.8 NC_003521.1 + 118975 0.67 0.644683
Target:  5'- uGCCGCUcaagaUGGUGaa-CGUGCCCGaCa- -3'
miRNA:   3'- gCGGCGA-----ACCACgugGCGCGGGC-Gau -5'
13970 5' -62.8 NC_003521.1 + 63628 0.67 0.660978
Target:  5'- gCGCCGCcUGGagaaGUACCGCacgcgcaaccccguGCCCGUg- -3'
miRNA:   3'- -GCGGCGaACCa---CGUGGCG--------------CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 167220 0.67 0.614925
Target:  5'- gCGCCGCaucUUGGUGUAgggcgccagguCCucguucaugaccaGCGCCCGCa- -3'
miRNA:   3'- -GCGGCG---AACCACGU-----------GG-------------CGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 213802 0.67 0.615884
Target:  5'- gCGCCGCgccUGGaGCcucgguuucgauGCCGUGgCCCGCUu -3'
miRNA:   3'- -GCGGCGa--ACCaCG------------UGGCGC-GGGCGAu -5'
13970 5' -62.8 NC_003521.1 + 205783 0.67 0.606298
Target:  5'- gCGCCGCacGGcaugagcgUGCccaACCGCGUCCGCc- -3'
miRNA:   3'- -GCGGCGaaCC--------ACG---UGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 129579 0.67 0.644683
Target:  5'- gGCUGCUccgccGCGCCGCGCCgGCc- -3'
miRNA:   3'- gCGGCGAacca-CGUGGCGCGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 59095 0.67 0.644683
Target:  5'- gGCCGCUUGGc-CAgCGUGCgCGCg- -3'
miRNA:   3'- gCGGCGAACCacGUgGCGCGgGCGau -5'
13970 5' -62.8 NC_003521.1 + 89249 0.67 0.654274
Target:  5'- aGaCCGCUaacGcGCGCCGCGuCCCGCg- -3'
miRNA:   3'- gC-GGCGAac-CaCGUGGCGC-GGGCGau -5'
13970 5' -62.8 NC_003521.1 + 162215 0.67 0.654274
Target:  5'- aGCCGCgcagucGGUGCcucuCCGCuuCCCGCg- -3'
miRNA:   3'- gCGGCGaa----CCACGu---GGCGc-GGGCGau -5'
13970 5' -62.8 NC_003521.1 + 104184 0.67 0.654274
Target:  5'- uCGCCGCc----GCcCCGCGCCCGUg- -3'
miRNA:   3'- -GCGGCGaaccaCGuGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 130360 0.67 0.663849
Target:  5'- gGCCGCag---GCGCCGUGCgCGCUc -3'
miRNA:   3'- gCGGCGaaccaCGUGGCGCGgGCGAu -5'
13970 5' -62.8 NC_003521.1 + 137685 0.67 0.625482
Target:  5'- -uCCGCcUGGUGCugcagcaccGCCGCGCgCUGCg- -3'
miRNA:   3'- gcGGCGaACCACG---------UGGCGCG-GGCGau -5'
13970 5' -62.8 NC_003521.1 + 74660 0.67 0.625482
Target:  5'- gCGCCGCUcg--GCcCUGCGCUCGCUc -3'
miRNA:   3'- -GCGGCGAaccaCGuGGCGCGGGCGAu -5'
13970 5' -62.8 NC_003521.1 + 157971 0.67 0.606298
Target:  5'- aCGgCGC-UGGUaGCgacGCCGcCGCCCGCg- -3'
miRNA:   3'- -GCgGCGaACCA-CG---UGGC-GCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 216820 0.67 0.60534
Target:  5'- aCGCCGgaUGGcGCGCaggagguCGCaGCCCGCg- -3'
miRNA:   3'- -GCGGCgaACCaCGUG-------GCG-CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 148418 0.67 0.635083
Target:  5'- aGCCa--UGGUGCgggcgGCCGCGCCgGCg- -3'
miRNA:   3'- gCGGcgaACCACG-----UGGCGCGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 77636 0.67 0.625482
Target:  5'- cCGCCGCcac---CACCGUGUCCGCUGc -3'
miRNA:   3'- -GCGGCGaaccacGUGGCGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 124964 0.67 0.660978
Target:  5'- gGCCGUguuugacgagGcGUGCGCCGCccgccugagccagcGCCUGCUGa -3'
miRNA:   3'- gCGGCGaa--------C-CACGUGGCG--------------CGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 210030 0.67 0.635083
Target:  5'- gGCC-CUcGGUGCgcuACCGCGCCCa--- -3'
miRNA:   3'- gCGGcGAaCCACG---UGGCGCGGGcgau -5'
13970 5' -62.8 NC_003521.1 + 209383 0.67 0.634123
Target:  5'- aCGCCGUgcUGGcGCugCGCaucauccGCCUGCUGc -3'
miRNA:   3'- -GCGGCGa-ACCaCGugGCG-------CGGGCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.