miRNA display CGI


Results 81 - 100 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 5' -62.8 NC_003521.1 + 162617 0.67 0.638923
Target:  5'- aGCCuccgacgaGCGCCGCGCCCGCUc -3'
miRNA:   3'- gCGGcgaacca-CGUGGCGCGGGCGAu -5'
13970 5' -62.8 NC_003521.1 + 77498 0.67 0.635083
Target:  5'- cCGCCGCUa-GUGcCGCuCGCGCC-GCUGa -3'
miRNA:   3'- -GCGGCGAacCAC-GUG-GCGCGGgCGAU- -5'
13970 5' -62.8 NC_003521.1 + 148418 0.67 0.635083
Target:  5'- aGCCa--UGGUGCgggcgGCCGCGCCgGCg- -3'
miRNA:   3'- gCGGcgaACCACG-----UGGCGCGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 89249 0.67 0.654274
Target:  5'- aGaCCGCUaacGcGCGCCGCGuCCCGCg- -3'
miRNA:   3'- gC-GGCGAac-CaCGUGGCGC-GGGCGau -5'
13970 5' -62.8 NC_003521.1 + 21654 0.68 0.568181
Target:  5'- aGCCGCcacUGGaacacGCugCgGCGCCUGCUGg -3'
miRNA:   3'- gCGGCGa--ACCa----CGugG-CGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 17418 0.68 0.577664
Target:  5'- aCGCCGCgccgGG-GCGCCacacgGCCCGCg- -3'
miRNA:   3'- -GCGGCGaa--CCaCGUGGcg---CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 18156 0.68 0.584323
Target:  5'- cCGCUGCUcaugcugggcagcgUGGaggcGCugCGCGCCUGCc- -3'
miRNA:   3'- -GCGGCGA--------------ACCa---CGugGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 72248 0.68 0.586229
Target:  5'- cCGCCGCUgGGUcaGCCGCcaccuuacccgcaGCCCGCc- -3'
miRNA:   3'- -GCGGCGAaCCAcgUGGCG-------------CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 123229 0.68 0.587182
Target:  5'- gGCgGCgguaggUGGUcguaGCGCCGCGCCCaGUa- -3'
miRNA:   3'- gCGgCGa-----ACCA----CGUGGCGCGGG-CGau -5'
13970 5' -62.8 NC_003521.1 + 139787 0.68 0.568181
Target:  5'- gGCCGCcaUGGagcUGCACgggCGUGCCCGCc- -3'
miRNA:   3'- gCGGCGa-ACC---ACGUG---GCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 196332 0.68 0.558736
Target:  5'- gGCCGgUUGuUGCGCUGCGUCaCGUUGg -3'
miRNA:   3'- gCGGCgAACcACGUGGCGCGG-GCGAU- -5'
13970 5' -62.8 NC_003521.1 + 74169 0.68 0.568181
Target:  5'- uGCCGC-UGGccgacUGCGCCgcgGCGCCCGg-- -3'
miRNA:   3'- gCGGCGaACC-----ACGUGG---CGCGGGCgau -5'
13970 5' -62.8 NC_003521.1 + 123493 0.68 0.586229
Target:  5'- uCGCCgGCggGGUGUcgucgucGCCGCugccGCCCGCa- -3'
miRNA:   3'- -GCGG-CGaaCCACG-------UGGCG----CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 153496 0.68 0.577664
Target:  5'- uGCCGCgcaGcUGCGCCuccagGCGCUCGCUGc -3'
miRNA:   3'- gCGGCGaa-CcACGUGG-----CGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 80140 0.68 0.558736
Target:  5'- uGCgGCc-GGUGCugCGCGUccagCCGCUGg -3'
miRNA:   3'- gCGgCGaaCCACGugGCGCG----GGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 129835 0.68 0.558736
Target:  5'- uGCUGCUgGG-GCccgugGCCGUGCCCuGCUAc -3'
miRNA:   3'- gCGGCGAaCCaCG-----UGGCGCGGG-CGAU- -5'
13970 5' -62.8 NC_003521.1 + 128733 0.68 0.577664
Target:  5'- aCGCCGCUgacuUGGcGC-CCGaGCCCGUg- -3'
miRNA:   3'- -GCGGCGA----ACCaCGuGGCgCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 77037 0.69 0.539987
Target:  5'- gGCCgGCggUGGUgGCGCCGCuaCCGUUGu -3'
miRNA:   3'- gCGG-CGa-ACCA-CGUGGCGcgGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 77448 0.69 0.503176
Target:  5'- uGCCGCcgUUGGUGCccgugacacuGCCGC-CgCCGCUGc -3'
miRNA:   3'- gCGGCG--AACCACG----------UGGCGcG-GGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 124118 0.69 0.494141
Target:  5'- gCGUCGCUgUGGUGauuCC-CGCCCGCg- -3'
miRNA:   3'- -GCGGCGA-ACCACgu-GGcGCGGGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.