miRNA display CGI


Results 81 - 100 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 5' -62.8 NC_003521.1 + 205783 0.67 0.606298
Target:  5'- gCGCCGCacGGcaugagcgUGCccaACCGCGUCCGCc- -3'
miRNA:   3'- -GCGGCGaaCC--------ACG---UGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 170730 0.67 0.606298
Target:  5'- aCGCCgGCcaGGUGCcCUGCGgcaaCCCGCUGu -3'
miRNA:   3'- -GCGG-CGaaCCACGuGGCGC----GGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 157971 0.67 0.606298
Target:  5'- aCGgCGC-UGGUaGCgacGCCGcCGCCCGCg- -3'
miRNA:   3'- -GCgGCGaACCA-CG---UGGC-GCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 216820 0.67 0.60534
Target:  5'- aCGCCGgaUGGcGCGCaggagguCGCaGCCCGCg- -3'
miRNA:   3'- -GCGGCgaACCaCGUG-------GCG-CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 123229 0.68 0.587182
Target:  5'- gGCgGCgguaggUGGUcguaGCGCCGCGCCCaGUa- -3'
miRNA:   3'- gCGgCGa-----ACCA----CGUGGCGCGGG-CGau -5'
13970 5' -62.8 NC_003521.1 + 72248 0.68 0.586229
Target:  5'- cCGCCGCUgGGUcaGCCGCcaccuuacccgcaGCCCGCc- -3'
miRNA:   3'- -GCGGCGAaCCAcgUGGCG-------------CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 123493 0.68 0.586229
Target:  5'- uCGCCgGCggGGUGUcgucgucGCCGCugccGCCCGCa- -3'
miRNA:   3'- -GCGG-CGaaCCACG-------UGGCG----CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 18156 0.68 0.584323
Target:  5'- cCGCUGCUcaugcugggcagcgUGGaggcGCugCGCGCCUGCc- -3'
miRNA:   3'- -GCGGCGA--------------ACCa---CGugGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 128733 0.68 0.577664
Target:  5'- aCGCCGCUgacuUGGcGC-CCGaGCCCGUg- -3'
miRNA:   3'- -GCGGCGA----ACCaCGuGGCgCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 153496 0.68 0.577664
Target:  5'- uGCCGCgcaGcUGCGCCuccagGCGCUCGCUGc -3'
miRNA:   3'- gCGGCGaa-CcACGUGG-----CGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 17418 0.68 0.577664
Target:  5'- aCGCCGCgccgGG-GCGCCacacgGCCCGCg- -3'
miRNA:   3'- -GCGGCGaa--CCaCGUGGcg---CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 21654 0.68 0.568181
Target:  5'- aGCCGCcacUGGaacacGCugCgGCGCCUGCUGg -3'
miRNA:   3'- gCGGCGa--ACCa----CGugG-CGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 139787 0.68 0.568181
Target:  5'- gGCCGCcaUGGagcUGCACgggCGUGCCCGCc- -3'
miRNA:   3'- gCGGCGa-ACC---ACGUG---GCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 74169 0.68 0.568181
Target:  5'- uGCCGC-UGGccgacUGCGCCgcgGCGCCCGg-- -3'
miRNA:   3'- gCGGCGaACC-----ACGUGG---CGCGGGCgau -5'
13970 5' -62.8 NC_003521.1 + 80140 0.68 0.558736
Target:  5'- uGCgGCc-GGUGCugCGCGUccagCCGCUGg -3'
miRNA:   3'- gCGgCGaaCCACGugGCGCG----GGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 129835 0.68 0.558736
Target:  5'- uGCUGCUgGG-GCccgugGCCGUGCCCuGCUAc -3'
miRNA:   3'- gCGGCGAaCCaCG-----UGGCGCGGG-CGAU- -5'
13970 5' -62.8 NC_003521.1 + 196332 0.68 0.558736
Target:  5'- gGCCGgUUGuUGCGCUGCGUCaCGUUGg -3'
miRNA:   3'- gCGGCgAACcACGUGGCGCGG-GCGAU- -5'
13970 5' -62.8 NC_003521.1 + 77037 0.69 0.539987
Target:  5'- gGCCgGCggUGGUgGCGCCGCuaCCGUUGu -3'
miRNA:   3'- gCGG-CGa-ACCA-CGUGGCGcgGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 32140 0.69 0.539987
Target:  5'- gGgCGC--GGUGCACCaagcggcggaagGCGCCCGCg- -3'
miRNA:   3'- gCgGCGaaCCACGUGG------------CGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 141095 0.69 0.539987
Target:  5'- aGCgGCUgGGUGCGCgaCGaCGCCUGCg- -3'
miRNA:   3'- gCGgCGAaCCACGUG--GC-GCGGGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.