miRNA display CGI


Results 61 - 80 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 5' -62.8 NC_003521.1 + 118975 0.67 0.644683
Target:  5'- uGCCGCUcaagaUGGUGaa-CGUGCCCGaCa- -3'
miRNA:   3'- gCGGCGA-----ACCACgugGCGCGGGC-Gau -5'
13970 5' -62.8 NC_003521.1 + 119208 0.66 0.701853
Target:  5'- gCGCUGCgccaggUGGUgaGCGCCagccagcugguGUGCUCGCUGg -3'
miRNA:   3'- -GCGGCGa-----ACCA--CGUGG-----------CGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 120913 0.66 0.673402
Target:  5'- gGCUGCUUGcGUuuGCgGCuGCCCGCg- -3'
miRNA:   3'- gCGGCGAAC-CAcgUGgCG-CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 122558 0.69 0.512282
Target:  5'- cCGCCGC-UGGUGC-CgGCuaCCGCg- -3'
miRNA:   3'- -GCGGCGaACCACGuGgCGcgGGCGau -5'
13970 5' -62.8 NC_003521.1 + 123229 0.68 0.587182
Target:  5'- gGCgGCgguaggUGGUcguaGCGCCGCGCCCaGUa- -3'
miRNA:   3'- gCGgCGa-----ACCA----CGUGGCGCGGG-CGau -5'
13970 5' -62.8 NC_003521.1 + 123493 0.68 0.586229
Target:  5'- uCGCCgGCggGGUGUcgucgucGCCGCugccGCCCGCa- -3'
miRNA:   3'- -GCGG-CGaaCCACG-------UGGCG----CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 124118 0.69 0.494141
Target:  5'- gCGUCGCUgUGGUGauuCC-CGCCCGCg- -3'
miRNA:   3'- -GCGGCGA-ACCACgu-GGcGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 124455 0.66 0.700911
Target:  5'- gGCCGCggcGGcacGCguucgccGCCGCGCUCGCg- -3'
miRNA:   3'- gCGGCGaa-CCa--CG-------UGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 124964 0.67 0.660978
Target:  5'- gGCCGUguuugacgagGcGUGCGCCGCccgccugagccagcGCCUGCUGa -3'
miRNA:   3'- gCGGCGaa--------C-CACGUGGCG--------------CGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 125429 0.66 0.720575
Target:  5'- gGCCGUggcGGccGC-CCGCGCCCuGCa- -3'
miRNA:   3'- gCGGCGaa-CCa-CGuGGCGCGGG-CGau -5'
13970 5' -62.8 NC_003521.1 + 125862 0.66 0.673402
Target:  5'- gCGCC--UUGGUG-GCCGCGUCCGUg- -3'
miRNA:   3'- -GCGGcgAACCACgUGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 127028 0.66 0.682925
Target:  5'- aCGCCGCcgcGGUGCccgUCGCGCUgGCc- -3'
miRNA:   3'- -GCGGCGaa-CCACGu--GGCGCGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 128039 0.66 0.719645
Target:  5'- gCGCCGCacgcGGUagaaguggccgacGCGCCGCGCgaugCCGCc- -3'
miRNA:   3'- -GCGGCGaa--CCA-------------CGUGGCGCG----GGCGau -5'
13970 5' -62.8 NC_003521.1 + 128733 0.68 0.577664
Target:  5'- aCGCCGCUgacuUGGcGC-CCGaGCCCGUg- -3'
miRNA:   3'- -GCGGCGA----ACCaCGuGGCgCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 129300 0.66 0.690517
Target:  5'- gGUCGUggaacuugaugGcGUGCGCCGCcgccgccaGCCCGCUGg -3'
miRNA:   3'- gCGGCGaa---------C-CACGUGGCG--------CGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 129579 0.67 0.644683
Target:  5'- gGCUGCUccgccGCGCCGCGCCgGCc- -3'
miRNA:   3'- gCGGCGAacca-CGUGGCGCGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 129835 0.68 0.558736
Target:  5'- uGCUGCUgGG-GCccgugGCCGUGCCCuGCUAc -3'
miRNA:   3'- gCGGCGAaCCaCG-----UGGCGCGGG-CGAU- -5'
13970 5' -62.8 NC_003521.1 + 129967 0.72 0.339686
Target:  5'- gGCCGCUgcucuacGUGCACCGuCGCugCCGCUGc -3'
miRNA:   3'- gCGGCGAac-----CACGUGGC-GCG--GGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 130360 0.67 0.663849
Target:  5'- gGCCGCag---GCGCCGUGCgCGCUc -3'
miRNA:   3'- gCGGCGaaccaCGUGGCGCGgGCGAu -5'
13970 5' -62.8 NC_003521.1 + 134221 0.7 0.485181
Target:  5'- uGCCGCUUGGccgaguagcUGC-CCGCG-CCGCc- -3'
miRNA:   3'- gCGGCGAACC---------ACGuGGCGCgGGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.