miRNA display CGI


Results 81 - 100 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 5' -62.8 NC_003521.1 + 135019 0.66 0.720575
Target:  5'- gGCUGCc-GG-GCACCGUGgCCUGCg- -3'
miRNA:   3'- gCGGCGaaCCaCGUGGCGC-GGGCGau -5'
13970 5' -62.8 NC_003521.1 + 136734 0.7 0.467499
Target:  5'- gCGCCGCcuuccGCguccuGCCGCGCCCGCUc -3'
miRNA:   3'- -GCGGCGaaccaCG-----UGGCGCGGGCGAu -5'
13970 5' -62.8 NC_003521.1 + 137500 0.79 0.129489
Target:  5'- gCGCCGCgaGGUcugggacgugcaGCGCCGCGUCCGCUu -3'
miRNA:   3'- -GCGGCGaaCCA------------CGUGGCGCGGGCGAu -5'
13970 5' -62.8 NC_003521.1 + 137685 0.67 0.625482
Target:  5'- -uCCGCcUGGUGCugcagcaccGCCGCGCgCUGCg- -3'
miRNA:   3'- gcGGCGaACCACG---------UGGCGCG-GGCGau -5'
13970 5' -62.8 NC_003521.1 + 137842 0.66 0.682925
Target:  5'- aCGCCGC--GGcUGgGCCGC-CCCGCc- -3'
miRNA:   3'- -GCGGCGaaCC-ACgUGGCGcGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 137973 0.78 0.142673
Target:  5'- uGCCGacgUGGUGCGCUGUGUCCGCg- -3'
miRNA:   3'- gCGGCga-ACCACGUGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 138914 0.71 0.43317
Target:  5'- gGCCGCUcGGUGCGCC-UGCCCu--- -3'
miRNA:   3'- gCGGCGAaCCACGUGGcGCGGGcgau -5'
13970 5' -62.8 NC_003521.1 + 139787 0.68 0.568181
Target:  5'- gGCCGCcaUGGagcUGCACgggCGUGCCCGCc- -3'
miRNA:   3'- gCGGCGa-ACC---ACGUG---GCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 141095 0.69 0.539987
Target:  5'- aGCgGCUgGGUGCGCgaCGaCGCCUGCg- -3'
miRNA:   3'- gCGgCGAaCCACGUG--GC-GCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 142562 0.66 0.720575
Target:  5'- uCGcCCGCcaGGcuCGCCGUGCCCGCc- -3'
miRNA:   3'- -GC-GGCGaaCCacGUGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 144211 0.69 0.521455
Target:  5'- aGCUGCagcaGUGCGCCGaCGCCUGCc- -3'
miRNA:   3'- gCGGCGaac-CACGUGGC-GCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 148418 0.67 0.635083
Target:  5'- aGCCa--UGGUGCgggcgGCCGCGCCgGCg- -3'
miRNA:   3'- gCGGcgaACCACG-----UGGCGCGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 148843 0.71 0.400353
Target:  5'- gGCCGaggUGcgugccGUGCACCGCGCCaGCUAc -3'
miRNA:   3'- gCGGCga-AC------CACGUGGCGCGGgCGAU- -5'
13970 5' -62.8 NC_003521.1 + 150682 0.77 0.176916
Target:  5'- gCGCCGCUgcugcugGGUGCuGCUGCGCCgGCg- -3'
miRNA:   3'- -GCGGCGAa------CCACG-UGGCGCGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 152296 0.67 0.615884
Target:  5'- gGCCGUUUcGGUGCGCC-UGCaCgGCUGc -3'
miRNA:   3'- gCGGCGAA-CCACGUGGcGCG-GgCGAU- -5'
13970 5' -62.8 NC_003521.1 + 152355 0.66 0.692411
Target:  5'- aCGCUGCUcUGGggccggccgggGCGgCGCGCCCuCUAc -3'
miRNA:   3'- -GCGGCGA-ACCa----------CGUgGCGCGGGcGAU- -5'
13970 5' -62.8 NC_003521.1 + 153496 0.66 0.701853
Target:  5'- gGCCGUcUGGUcaGCGCCaGCGUggaCCGCa- -3'
miRNA:   3'- gCGGCGaACCA--CGUGG-CGCG---GGCGau -5'
13970 5' -62.8 NC_003521.1 + 153496 0.68 0.577664
Target:  5'- uGCCGCgcaGcUGCGCCuccagGCGCUCGCUGc -3'
miRNA:   3'- gCGGCGaa-CcACGUGG-----CGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 157971 0.67 0.606298
Target:  5'- aCGgCGC-UGGUaGCgacGCCGcCGCCCGCg- -3'
miRNA:   3'- -GCgGCGaACCA-CG---UGGC-GCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 162215 0.67 0.654274
Target:  5'- aGCCGCgcagucGGUGCcucuCCGCuuCCCGCg- -3'
miRNA:   3'- gCGGCGaa----CCACGu---GGCGc-GGGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.