miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 5' -62.8 NC_003521.1 + 35133 0.74 0.272418
Target:  5'- uCGCCGCgacugagcgcgGGUGCGCCacGCGCCCGg-- -3'
miRNA:   3'- -GCGGCGaa---------CCACGUGG--CGCGGGCgau -5'
13970 5' -62.8 NC_003521.1 + 164426 0.76 0.20364
Target:  5'- cCGCCGC-UGGUGCuagcagcgccACCGCGgCCGCg- -3'
miRNA:   3'- -GCGGCGaACCACG----------UGGCGCgGGCGau -5'
13970 5' -62.8 NC_003521.1 + 150682 0.77 0.176916
Target:  5'- gCGCCGCUgcugcugGGUGCuGCUGCGCCgGCg- -3'
miRNA:   3'- -GCGGCGAa------CCACG-UGGCGCGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 32888 0.78 0.160874
Target:  5'- gCGCCGCc-GGUGCugccGCCGUGCCCGCc- -3'
miRNA:   3'- -GCGGCGaaCCACG----UGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 137973 0.78 0.142673
Target:  5'- uGCCGacgUGGUGCGCUGUGUCCGCg- -3'
miRNA:   3'- gCGGCga-ACCACGUGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 77448 0.69 0.503176
Target:  5'- uGCCGCcgUUGGUGCccgugacacuGCCGC-CgCCGCUGc -3'
miRNA:   3'- gCGGCG--AACCACG----------UGGCGcG-GGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 117409 0.69 0.512282
Target:  5'- cCGCCGUc-GGU--GCCGUGCCCGCg- -3'
miRNA:   3'- -GCGGCGaaCCAcgUGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 74660 0.67 0.625482
Target:  5'- gCGCCGCUcg--GCcCUGCGCUCGCUc -3'
miRNA:   3'- -GCGGCGAaccaCGuGGCGCGGGCGAu -5'
13970 5' -62.8 NC_003521.1 + 157971 0.67 0.606298
Target:  5'- aCGgCGC-UGGUaGCgacGCCGcCGCCCGCg- -3'
miRNA:   3'- -GCgGCGaACCA-CG---UGGC-GCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 216820 0.67 0.60534
Target:  5'- aCGCCGgaUGGcGCGCaggagguCGCaGCCCGCg- -3'
miRNA:   3'- -GCGGCgaACCaCGUG-------GCG-CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 123493 0.68 0.586229
Target:  5'- uCGCCgGCggGGUGUcgucgucGCCGCugccGCCCGCa- -3'
miRNA:   3'- -GCGG-CGaaCCACG-------UGGCG----CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 153496 0.68 0.577664
Target:  5'- uGCCGCgcaGcUGCGCCuccagGCGCUCGCUGc -3'
miRNA:   3'- gCGGCGaa-CcACGUGG-----CGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 128733 0.68 0.577664
Target:  5'- aCGCCGCUgacuUGGcGC-CCGaGCCCGUg- -3'
miRNA:   3'- -GCGGCGA----ACCaCGuGGCgCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 74169 0.68 0.568181
Target:  5'- uGCCGC-UGGccgacUGCGCCgcgGCGCCCGg-- -3'
miRNA:   3'- gCGGCGaACC-----ACGUGG---CGCGGGCgau -5'
13970 5' -62.8 NC_003521.1 + 129835 0.68 0.558736
Target:  5'- uGCUGCUgGG-GCccgugGCCGUGCCCuGCUAc -3'
miRNA:   3'- gCGGCGAaCCaCG-----UGGCGCGGG-CGAU- -5'
13970 5' -62.8 NC_003521.1 + 80140 0.68 0.558736
Target:  5'- uGCgGCc-GGUGCugCGCGUccagCCGCUGg -3'
miRNA:   3'- gCGgCGaaCCACGugGCGCG----GGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 32140 0.69 0.539987
Target:  5'- gGgCGC--GGUGCACCaagcggcggaagGCGCCCGCg- -3'
miRNA:   3'- gCgGCGaaCCACGUGG------------CGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 212360 0.69 0.530692
Target:  5'- -cCCGC-UGGUGCACCGC-CCaagGCUGg -3'
miRNA:   3'- gcGGCGaACCACGUGGCGcGGg--CGAU- -5'
13970 5' -62.8 NC_003521.1 + 233034 0.69 0.521455
Target:  5'- uGCCGCUucgagcgcUGGUGUaaggcucgucuGCgGCGUCUGCUGg -3'
miRNA:   3'- gCGGCGA--------ACCACG-----------UGgCGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 144211 0.69 0.521455
Target:  5'- aGCUGCagcaGUGCGCCGaCGCCUGCc- -3'
miRNA:   3'- gCGGCGaac-CACGUGGC-GCGGGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.