miRNA display CGI


Results 61 - 80 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 5' -62.8 NC_003521.1 + 77636 0.67 0.625482
Target:  5'- cCGCCGCcac---CACCGUGUCCGCUGc -3'
miRNA:   3'- -GCGGCGaaccacGUGGCGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 125429 0.66 0.720575
Target:  5'- gGCCGUggcGGccGC-CCGCGCCCuGCa- -3'
miRNA:   3'- gCGGCGaa-CCa-CGuGGCGCGGG-CGau -5'
13970 5' -62.8 NC_003521.1 + 171195 0.69 0.530692
Target:  5'- aCGCCGagcUGGUGCACUGCucGCuCUGCg- -3'
miRNA:   3'- -GCGGCga-ACCACGUGGCG--CG-GGCGau -5'
13970 5' -62.8 NC_003521.1 + 205908 0.69 0.539987
Target:  5'- gCGCCGCUaccUGcUGCGCUucgaggGCGCCUGCg- -3'
miRNA:   3'- -GCGGCGA---ACcACGUGG------CGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 196332 0.68 0.558736
Target:  5'- gGCCGgUUGuUGCGCUGCGUCaCGUUGg -3'
miRNA:   3'- gCGGCgAACcACGUGGCGCGG-GCGAU- -5'
13970 5' -62.8 NC_003521.1 + 139787 0.68 0.568181
Target:  5'- gGCCGCcaUGGagcUGCACgggCGUGCCCGCc- -3'
miRNA:   3'- gCGGCGa-ACC---ACGUG---GCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 18156 0.68 0.584323
Target:  5'- cCGCUGCUcaugcugggcagcgUGGaggcGCugCGCGCCUGCc- -3'
miRNA:   3'- -GCGGCGA--------------ACCa---CGugGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 72248 0.68 0.586229
Target:  5'- cCGCCGCUgGGUcaGCCGCcaccuuacccgcaGCCCGCc- -3'
miRNA:   3'- -GCGGCGAaCCAcgUGGCG-------------CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 170730 0.67 0.606298
Target:  5'- aCGCCgGCcaGGUGCcCUGCGgcaaCCCGCUGu -3'
miRNA:   3'- -GCGG-CGaaCCACGuGGCGC----GGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 173007 0.66 0.717782
Target:  5'- uGCCGCUgcacgcggaugcuuUGGaGCA-CGCGCUCGCc- -3'
miRNA:   3'- gCGGCGA--------------ACCaCGUgGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 170804 0.66 0.711244
Target:  5'- uGuCCGCguuaccUGGUacCGCUGCGCUCGCUGg -3'
miRNA:   3'- gC-GGCGa-----ACCAc-GUGGCGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 72985 0.66 0.711244
Target:  5'- gGCCGCggGGgGCcugGCCGCuCCUGCUc -3'
miRNA:   3'- gCGGCGaaCCaCG---UGGCGcGGGCGAu -5'
13970 5' -62.8 NC_003521.1 + 118975 0.67 0.644683
Target:  5'- uGCCGCUcaagaUGGUGaa-CGUGCCCGaCa- -3'
miRNA:   3'- gCGGCGA-----ACCACgugGCGCGGGC-Gau -5'
13970 5' -62.8 NC_003521.1 + 124964 0.67 0.660978
Target:  5'- gGCCGUguuugacgagGcGUGCGCCGCccgccugagccagcGCCUGCUGa -3'
miRNA:   3'- gCGGCGaa--------C-CACGUGGCG--------------CGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 185743 0.66 0.681974
Target:  5'- uCGCCGagcgGGUGCGCCggaGCGCcuaggggCCGCg- -3'
miRNA:   3'- -GCGGCgaa-CCACGUGG---CGCG-------GGCGau -5'
13970 5' -62.8 NC_003521.1 + 198798 0.66 0.692411
Target:  5'- aGCUGCgUGGUGCcgGCgGCGUCUGUc- -3'
miRNA:   3'- gCGGCGaACCACG--UGgCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 17694 0.66 0.700911
Target:  5'- gGCCaacugGCUccUGGUGCugCGCGagacggccgccauCCCGCa- -3'
miRNA:   3'- gCGG-----CGA--ACCACGugGCGC-------------GGGCGau -5'
13970 5' -62.8 NC_003521.1 + 119208 0.66 0.701853
Target:  5'- gCGCUGCgccaggUGGUgaGCGCCagccagcugguGUGCUCGCUGg -3'
miRNA:   3'- -GCGGCGa-----ACCA--CGUGG-----------CGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 205783 0.67 0.606298
Target:  5'- gCGCCGCacGGcaugagcgUGCccaACCGCGUCCGCc- -3'
miRNA:   3'- -GCGGCGaaCC--------ACG---UGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 224528 0.66 0.720575
Target:  5'- aGCCGCcgGGccgguagGCACCccgGCGCCCaGCa- -3'
miRNA:   3'- gCGGCGaaCCa------CGUGG---CGCGGG-CGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.