Results 41 - 60 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13971 | 3' | -51.8 | NC_003521.1 | + | 95963 | 0.66 | 0.997372 |
Target: 5'- gCGGUAGGCGUacgaCAGGCGCaggaCCGUGa -3' miRNA: 3'- -GCCGUUUGCAag--GUUCGUGc---GGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 157564 | 0.66 | 0.997372 |
Target: 5'- -cGCAGGCGUgcUCCcc-CACGCCAaGGa -3' miRNA: 3'- gcCGUUUGCA--AGGuucGUGCGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 190695 | 0.66 | 0.998125 |
Target: 5'- aGGCAcacGACGgguagCCA--CACGCuCGUGGg -3' miRNA: 3'- gCCGU---UUGCaa---GGUucGUGCG-GUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 27013 | 0.66 | 0.998125 |
Target: 5'- aCGGCAucgaaaccGAgGcUCCAGGCGCGgCGcagGGg -3' miRNA: 3'- -GCCGU--------UUgCaAGGUUCGUGCgGUa--CC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 205139 | 0.66 | 0.998125 |
Target: 5'- uGGUGAACcaGggCCGGGUG-GCCGUGGa -3' miRNA: 3'- gCCGUUUG--CaaGGUUCGUgCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 96654 | 0.66 | 0.996382 |
Target: 5'- gCGGCAGGCGgcgCCGgcgugcuugaagAGCaACGCCucGGa -3' miRNA: 3'- -GCCGUUUGCaa-GGU------------UCG-UGCGGuaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 16119 | 0.66 | 0.996382 |
Target: 5'- gGGCgGGACGUgaacuUCCA--CACGCCcgGGc -3' miRNA: 3'- gCCG-UUUGCA-----AGGUucGUGCGGuaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 233161 | 0.66 | 0.996382 |
Target: 5'- gGGCAc-CGcugUCCGcGC-CGCCGUGGc -3' miRNA: 3'- gCCGUuuGCa--AGGUuCGuGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 118191 | 0.66 | 0.996382 |
Target: 5'- cCGGCAAAguCGgggccgCCGAGCGCGCgGc-- -3' miRNA: 3'- -GCCGUUU--GCaa----GGUUCGUGCGgUacc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 53200 | 0.66 | 0.996382 |
Target: 5'- gCGGCGcGCGgcCCGgcucgcccuGGCAgGCCGUGc -3' miRNA: 3'- -GCCGUuUGCaaGGU---------UCGUgCGGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 87927 | 0.66 | 0.996382 |
Target: 5'- uGGCcgcCGcgCCGGGCAUGCucuuCAUGGa -3' miRNA: 3'- gCCGuuuGCaaGGUUCGUGCG----GUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 64334 | 0.66 | 0.996382 |
Target: 5'- aCGaGCAGAUGagCCAGcuGCAgGCCcUGGg -3' miRNA: 3'- -GC-CGUUUGCaaGGUU--CGUgCGGuACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 25551 | 0.66 | 0.996382 |
Target: 5'- aCGGCGGACGcuguugUgCAGGCG-GCCGcGGg -3' miRNA: 3'- -GCCGUUUGCa-----AgGUUCGUgCGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 196253 | 0.66 | 0.995782 |
Target: 5'- gCGGUuucuGugGUUCCGGGUAC-CCGcGGu -3' miRNA: 3'- -GCCGu---UugCAAGGUUCGUGcGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 131049 | 0.66 | 0.995782 |
Target: 5'- gCGGCGgcGGCGggCCucuGgACGCgGUGGc -3' miRNA: 3'- -GCCGU--UUGCaaGGuu-CgUGCGgUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 65499 | 0.66 | 0.995782 |
Target: 5'- aGGCAGGCGaccUUCauCGAGCGCuGUCAgcUGGg -3' miRNA: 3'- gCCGUUUGC---AAG--GUUCGUG-CGGU--ACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 91028 | 0.66 | 0.996909 |
Target: 5'- aCGGCcGGcCGUUCgcGGaACGCCGUGGc -3' miRNA: 3'- -GCCGuUU-GCAAGguUCgUGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 15722 | 0.66 | 0.996382 |
Target: 5'- uCGGCAucccgcacAACugGUUCCugcAGGUGCGCCcgGGc -3' miRNA: 3'- -GCCGU--------UUG--CAAGG---UUCGUGCGGuaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 74540 | 0.66 | 0.996909 |
Target: 5'- aGGCcacGCGgaCCAGcCGCGCCGUGc -3' miRNA: 3'- gCCGuu-UGCaaGGUUcGUGCGGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 166673 | 0.66 | 0.995718 |
Target: 5'- gCGGCAccugggccccguGGCGcgCCAcgucguccugcacGGCGC-CCAUGGg -3' miRNA: 3'- -GCCGU------------UUGCaaGGU-------------UCGUGcGGUACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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