miRNA display CGI


Results 61 - 80 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 209565 0.66 0.998125
Target:  5'- gCGGCGAcggugGCGggggUCCGGGgGCGCaCGUagcGGa -3'
miRNA:   3'- -GCCGUU-----UGCa---AGGUUCgUGCG-GUA---CC- -5'
13971 3' -51.8 NC_003521.1 + 205139 0.66 0.998125
Target:  5'- uGGUGAACcaGggCCGGGUG-GCCGUGGa -3'
miRNA:   3'- gCCGUUUG--CaaGGUUCGUgCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 163063 0.66 0.998125
Target:  5'- gCGGCAcuACGUgaaGAGcCACGCCGaGGc -3'
miRNA:   3'- -GCCGUu-UGCAaggUUC-GUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 27013 0.66 0.998125
Target:  5'- aCGGCAucgaaaccGAgGcUCCAGGCGCGgCGcagGGg -3'
miRNA:   3'- -GCCGU--------UUgCaAGGUUCGUGCgGUa--CC- -5'
13971 3' -51.8 NC_003521.1 + 76991 0.66 0.996909
Target:  5'- gCGGCGAugGg--CAGGCACGgCAUc- -3'
miRNA:   3'- -GCCGUUugCaagGUUCGUGCgGUAcc -5'
13971 3' -51.8 NC_003521.1 + 40257 0.67 0.995104
Target:  5'- cCGGCAGcucACGcuugguuggCCGuuuGCACGCC-UGGg -3'
miRNA:   3'- -GCCGUU---UGCaa-------GGUu--CGUGCGGuACC- -5'
13971 3' -51.8 NC_003521.1 + 128151 0.67 0.995104
Target:  5'- uCGGCGAAgGccUgCAGGCAgGgCGUGGg -3'
miRNA:   3'- -GCCGUUUgCa-AgGUUCGUgCgGUACC- -5'
13971 3' -51.8 NC_003521.1 + 14214 0.67 0.99339
Target:  5'- gCGGCGagccccuGACGccgCUggGCuACGCCGUGa -3'
miRNA:   3'- -GCCGU-------UUGCaa-GGuuCG-UGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 16262 0.67 0.995104
Target:  5'- gCGGCu-GCGcugccgcuggUUCCugcuGgGCGCCGUGGg -3'
miRNA:   3'- -GCCGuuUGC----------AAGGuu--CgUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 214309 0.67 0.994258
Target:  5'- uGGCuc-CGUgccucuugugCCAAGCAgucucucucgaucCGCCGUGGa -3'
miRNA:   3'- gCCGuuuGCAa---------GGUUCGU-------------GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 178785 0.67 0.99339
Target:  5'- gCGGCGuccgcggGACGggCgAGGCAUGCCcgGcGg -3'
miRNA:   3'- -GCCGU-------UUGCaaGgUUCGUGCGGuaC-C- -5'
13971 3' -51.8 NC_003521.1 + 210176 0.67 0.993481
Target:  5'- aGGCGccauGACGag-CAGGCGCGCCGccggUGGc -3'
miRNA:   3'- gCCGU----UUGCaagGUUCGUGCGGU----ACC- -5'
13971 3' -51.8 NC_003521.1 + 185355 0.67 0.995104
Target:  5'- aCGGCAAgGCGgcgcagugccucUUCC-AGCGCGCCGc-- -3'
miRNA:   3'- -GCCGUU-UGC------------AAGGuUCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 40674 0.67 0.994339
Target:  5'- gGGCAAACGaUgUggGCGgcgUGCUGUGGa -3'
miRNA:   3'- gCCGUUUGCaAgGuuCGU---GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 157164 0.67 0.995104
Target:  5'- aGGUcAACGUgCgCAAGCGCGCCu--- -3'
miRNA:   3'- gCCGuUUGCAaG-GUUCGUGCGGuacc -5'
13971 3' -51.8 NC_003521.1 + 124097 0.67 0.994339
Target:  5'- gGGCGccGAC--UCCGGGaC-CGCCGUGGa -3'
miRNA:   3'- gCCGU--UUGcaAGGUUC-GuGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 192919 0.67 0.994339
Target:  5'- uGGaguuucuGCGUUCCcaGAGcCGCGCCcUGGg -3'
miRNA:   3'- gCCguu----UGCAAGG--UUC-GUGCGGuACC- -5'
13971 3' -51.8 NC_003521.1 + 91520 0.67 0.994339
Target:  5'- aCGGCGGccGCGUcgucgcgcUCC-AGCACGUacuuGUGGg -3'
miRNA:   3'- -GCCGUU--UGCA--------AGGuUCGUGCGg---UACC- -5'
13971 3' -51.8 NC_003521.1 + 18040 0.67 0.994258
Target:  5'- aCGuGCAGAaGUUCCucuGCgccgaccccaccgACGCCGUGGc -3'
miRNA:   3'- -GC-CGUUUgCAAGGuu-CG-------------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 57312 0.67 0.993297
Target:  5'- aCGGCAaaauaGACGcucggacaccugUCCGAGCGCGgUAUGa -3'
miRNA:   3'- -GCCGU-----UUGCa-----------AGGUUCGUGCgGUACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.