miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 76748 0.67 0.991453
Target:  5'- aGGCAugacGACGaccUCCgAGGCGaccguCGCCGUGGc -3'
miRNA:   3'- gCCGU----UUGCa--AGG-UUCGU-----GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 192919 0.67 0.994339
Target:  5'- uGGaguuucuGCGUUCCcaGAGcCGCGCCcUGGg -3'
miRNA:   3'- gCCguu----UGCAAGG--UUC-GUGCGGuACC- -5'
13971 3' -51.8 NC_003521.1 + 18040 0.67 0.994258
Target:  5'- aCGuGCAGAaGUUCCucuGCgccgaccccaccgACGCCGUGGc -3'
miRNA:   3'- -GC-CGUUUgCAAGGuu-CG-------------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 214309 0.67 0.994258
Target:  5'- uGGCuc-CGUgccucuugugCCAAGCAgucucucucgaucCGCCGUGGa -3'
miRNA:   3'- gCCGuuuGCAa---------GGUUCGU-------------GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 210176 0.67 0.993481
Target:  5'- aGGCGccauGACGag-CAGGCGCGCCGccggUGGc -3'
miRNA:   3'- gCCGU----UUGCaagGUUCGUGCGGU----ACC- -5'
13971 3' -51.8 NC_003521.1 + 178785 0.67 0.99339
Target:  5'- gCGGCGuccgcggGACGggCgAGGCAUGCCcgGcGg -3'
miRNA:   3'- -GCCGU-------UUGCaaGgUUCGUGCGGuaC-C- -5'
13971 3' -51.8 NC_003521.1 + 177785 0.67 0.992522
Target:  5'- gGGCcGACGgggccugUCCGcuGGUggGCGUCGUGGg -3'
miRNA:   3'- gCCGuUUGCa------AGGU--UCG--UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 124097 0.67 0.994339
Target:  5'- gGGCGccGAC--UCCGGGaC-CGCCGUGGa -3'
miRNA:   3'- gCCGU--UUGcaAGGUUC-GuGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 200385 0.67 0.992522
Target:  5'- gGGCuaGAGCGcg-CGAGCACcugGCCGUGGu -3'
miRNA:   3'- gCCG--UUUGCaagGUUCGUG---CGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 239644 0.67 0.992522
Target:  5'- uGGCAcaGGCcgUCCAgucccguaGGCgGCGCCGUGGc -3'
miRNA:   3'- gCCGU--UUGcaAGGU--------UCG-UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 213462 0.67 0.992522
Target:  5'- aGGCGucgcacgucauGACGgcgCCGGuGCACGCCAUccacaGGg -3'
miRNA:   3'- gCCGU-----------UUGCaa-GGUU-CGUGCGGUA-----CC- -5'
13971 3' -51.8 NC_003521.1 + 170744 0.67 0.991453
Target:  5'- uGGCAuuauCGgUCU-GGUugGCCAUGGa -3'
miRNA:   3'- gCCGUuu--GCaAGGuUCGugCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 162368 0.67 0.991453
Target:  5'- gGGCc-GCGUUCCcAGCcGCGCCGa-- -3'
miRNA:   3'- gCCGuuUGCAAGGuUCG-UGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 142554 0.67 0.991453
Target:  5'- aCGGCuuguCGcccgCCAGGCuCGCCGUGc -3'
miRNA:   3'- -GCCGuuu-GCaa--GGUUCGuGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 23002 0.67 0.991453
Target:  5'- aCGGUGAuaGCGgcaUCCGAGgAgGCCAaUGGg -3'
miRNA:   3'- -GCCGUU--UGCa--AGGUUCgUgCGGU-ACC- -5'
13971 3' -51.8 NC_003521.1 + 102830 0.67 0.991453
Target:  5'- gCGGCGcugcgagaAGCGcgCCAgGGCGC-CCGUGGc -3'
miRNA:   3'- -GCCGU--------UUGCaaGGU-UCGUGcGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 57312 0.67 0.993297
Target:  5'- aCGGCAaaauaGACGcucggacaccugUCCGAGCGCGgUAUGa -3'
miRNA:   3'- -GCCGU-----UUGCa-----------AGGUUCGUGCgGUACc -5'
13971 3' -51.8 NC_003521.1 + 157164 0.67 0.995104
Target:  5'- aGGUcAACGUgCgCAAGCGCGCCu--- -3'
miRNA:   3'- gCCGuUUGCAaG-GUUCGUGCGGuacc -5'
13971 3' -51.8 NC_003521.1 + 40674 0.67 0.994339
Target:  5'- gGGCAAACGaUgUggGCGgcgUGCUGUGGa -3'
miRNA:   3'- gCCGUUUGCaAgGuuCGU---GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 40257 0.67 0.995104
Target:  5'- cCGGCAGcucACGcuugguuggCCGuuuGCACGCC-UGGg -3'
miRNA:   3'- -GCCGUU---UGCaa-------GGUu--CGUGCGGuACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.