Results 101 - 120 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13971 | 3' | -51.8 | NC_003521.1 | + | 97612 | 0.67 | 0.993481 |
Target: 5'- aCGGC-GACGgcUCCGGcCugGCCAUGa -3' miRNA: 3'- -GCCGuUUGCa-AGGUUcGugCGGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 37428 | 0.67 | 0.993481 |
Target: 5'- uGGC--GCGgcgCCGAGCcucugaaggugACGCUGUGGg -3' miRNA: 3'- gCCGuuUGCaa-GGUUCG-----------UGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 155636 | 0.68 | 0.987513 |
Target: 5'- gCGGCGGugGUagCAGaaGCGCCGUGc -3' miRNA: 3'- -GCCGUUugCAagGUUcgUGCGGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 214355 | 0.68 | 0.987513 |
Target: 5'- gCGcGCAGGCGgugcucCCAGGcCACGCCGUu- -3' miRNA: 3'- -GC-CGUUUGCaa----GGUUC-GUGCGGUAcc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 200885 | 0.68 | 0.985927 |
Target: 5'- aGGC-AACGUacgCuCAGGCcgACGCCAUGa -3' miRNA: 3'- gCCGuUUGCAa--G-GUUCG--UGCGGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 37322 | 0.68 | 0.985927 |
Target: 5'- gCGGCAGACGguagagaUCGAcGUACGCUAUGu -3' miRNA: 3'- -GCCGUUUGCaa-----GGUU-CGUGCGGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 28006 | 0.68 | 0.985927 |
Target: 5'- gCGGCAccuCGcugUCCuccuccAGCACGCCGcGGg -3' miRNA: 3'- -GCCGUuu-GCa--AGGu-----UCGUGCGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 127786 | 0.68 | 0.985251 |
Target: 5'- gCGGCGGccguagccgcACGUgcuccaugaucugCCAGGCGCGCagcuCGUGGa -3' miRNA: 3'- -GCCGUU----------UGCAa------------GGUUCGUGCG----GUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 204623 | 0.68 | 0.988957 |
Target: 5'- uGGCGAcaGCGUUugagccgcucggCCAggugcgugGGCACGCCGUccGGg -3' miRNA: 3'- gCCGUU--UGCAA------------GGU--------UCGUGCGGUA--CC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 151566 | 0.68 | 0.984191 |
Target: 5'- gGGCGucuCGUgucaCCGcgucAGCACGCCcgAUGGg -3' miRNA: 3'- gCCGUuu-GCAa---GGU----UCGUGCGG--UACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 45245 | 0.68 | 0.985927 |
Target: 5'- cCGGCAGACGggccugacccCCAAGCGCuuCC-UGGa -3' miRNA: 3'- -GCCGUUUGCaa--------GGUUCGUGc-GGuACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 119084 | 0.68 | 0.984191 |
Target: 5'- gGGCAAGCagguGUggCAGGCGCGCC-UGa -3' miRNA: 3'- gCCGUUUG----CAagGUUCGUGCGGuACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 126155 | 0.68 | 0.988957 |
Target: 5'- aCGGCGAACaggUCCugcacgcGCACGcCCAUGu -3' miRNA: 3'- -GCCGUUUGca-AGGuu-----CGUGC-GGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 202413 | 0.68 | 0.984191 |
Target: 5'- cCGGUGAAaag-CCAGGCGCaacCCAUGGg -3' miRNA: 3'- -GCCGUUUgcaaGGUUCGUGc--GGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 155298 | 0.68 | 0.988957 |
Target: 5'- gCGGC---UGUUCCucucGCACGCCGaGGu -3' miRNA: 3'- -GCCGuuuGCAAGGuu--CGUGCGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 130754 | 0.68 | 0.988957 |
Target: 5'- uCGGCGGGCG---CGAGCgccGCGCCggGGg -3' miRNA: 3'- -GCCGUUUGCaagGUUCG---UGCGGuaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 113975 | 0.68 | 0.988957 |
Target: 5'- aCGGCAGGCGgccggCCGGGCACcgGCUg--- -3' miRNA: 3'- -GCCGUUUGCaa---GGUUCGUG--CGGuacc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 119345 | 0.68 | 0.988957 |
Target: 5'- gGGCAGGgGUccggccUCCAuGGaCACGCCggGGa -3' miRNA: 3'- gCCGUUUgCA------AGGU-UC-GUGCGGuaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 132405 | 0.68 | 0.988819 |
Target: 5'- cCGGCAGACGcugUUUCGccugugcGGCgACGCCGcUGGu -3' miRNA: 3'- -GCCGUUUGC---AAGGU-------UCG-UGCGGU-ACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 169436 | 0.68 | 0.987513 |
Target: 5'- -aGCAGGCGgUCCucgaacAGCGgguCGCCGUGGa -3' miRNA: 3'- gcCGUUUGCaAGGu-----UCGU---GCGGUACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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