miRNA display CGI


Results 121 - 140 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 126155 0.68 0.988957
Target:  5'- aCGGCGAACaggUCCugcacgcGCACGcCCAUGu -3'
miRNA:   3'- -GCCGUUUGca-AGGuu-----CGUGC-GGUACc -5'
13971 3' -51.8 NC_003521.1 + 197472 0.68 0.988957
Target:  5'- uGGCGGAUGUUCaCGcgcGGCGgGCCGgacGGc -3'
miRNA:   3'- gCCGUUUGCAAG-GU---UCGUgCGGUa--CC- -5'
13971 3' -51.8 NC_003521.1 + 155298 0.68 0.988957
Target:  5'- gCGGC---UGUUCCucucGCACGCCGaGGu -3'
miRNA:   3'- -GCCGuuuGCAAGGuu--CGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 130754 0.68 0.988957
Target:  5'- uCGGCGGGCG---CGAGCgccGCGCCggGGg -3'
miRNA:   3'- -GCCGUUUGCaagGUUCG---UGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 133754 0.68 0.990268
Target:  5'- cCGGCAGgcccgGCGaUUCCGGGgACGCgGcGGa -3'
miRNA:   3'- -GCCGUU-----UGC-AAGGUUCgUGCGgUaCC- -5'
13971 3' -51.8 NC_003521.1 + 113975 0.68 0.988957
Target:  5'- aCGGCAGGCGgccggCCGGGCACcgGCUg--- -3'
miRNA:   3'- -GCCGUUUGCaa---GGUUCGUG--CGGuacc -5'
13971 3' -51.8 NC_003521.1 + 112205 0.68 0.988957
Target:  5'- aCGGCAAcuuCGUgcucagccCCGAGaACGCCGUGa -3'
miRNA:   3'- -GCCGUUu--GCAa-------GGUUCgUGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 37849 0.68 0.988957
Target:  5'- cCGGaGGGCGUUacaCAGGCugGCCugcGGa -3'
miRNA:   3'- -GCCgUUUGCAAg--GUUCGugCGGua-CC- -5'
13971 3' -51.8 NC_003521.1 + 204310 0.68 0.990268
Target:  5'- cCGGCGggUGa-CCGcAGUccgACGCCAUGGu -3'
miRNA:   3'- -GCCGUuuGCaaGGU-UCG---UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 119345 0.68 0.988957
Target:  5'- gGGCAGGgGUccggccUCCAuGGaCACGCCggGGa -3'
miRNA:   3'- gCCGUUUgCA------AGGU-UC-GUGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 132405 0.68 0.988819
Target:  5'- cCGGCAGACGcugUUUCGccugugcGGCgACGCCGcUGGu -3'
miRNA:   3'- -GCCGUUUGC---AAGGU-------UCG-UGCGGU-ACC- -5'
13971 3' -51.8 NC_003521.1 + 169436 0.68 0.987513
Target:  5'- -aGCAGGCGgUCCucgaacAGCGgguCGCCGUGGa -3'
miRNA:   3'- gcCGUUUGCaAGGu-----UCGU---GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 45245 0.68 0.985927
Target:  5'- cCGGCAGACGggccugacccCCAAGCGCuuCC-UGGa -3'
miRNA:   3'- -GCCGUUUGCaa--------GGUUCGUGc-GGuACC- -5'
13971 3' -51.8 NC_003521.1 + 117061 0.68 0.990268
Target:  5'- aGGCGGccGCGgagCCGgcGGuCACGCCGUGc -3'
miRNA:   3'- gCCGUU--UGCaa-GGU--UC-GUGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 71530 0.69 0.982298
Target:  5'- cCGGCcGACGUcaCCGAGCcCGCCGc-- -3'
miRNA:   3'- -GCCGuUUGCAa-GGUUCGuGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 14743 0.69 0.972992
Target:  5'- gGGCGuGACGggCCGgccgcggccggGGCGCGCCuucGUGGc -3'
miRNA:   3'- gCCGU-UUGCaaGGU-----------UCGUGCGG---UACC- -5'
13971 3' -51.8 NC_003521.1 + 167212 0.69 0.980239
Target:  5'- uGGCAGGCGcgCCGcaucuugguguAGgGCGCCA-GGu -3'
miRNA:   3'- gCCGUUUGCaaGGU-----------UCgUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 148094 0.69 0.975593
Target:  5'- aGGCAGACGgUCCGgAGguCGCgGgUGGa -3'
miRNA:   3'- gCCGUUUGCaAGGU-UCguGCGgU-ACC- -5'
13971 3' -51.8 NC_003521.1 + 101841 0.69 0.974055
Target:  5'- uGGCGGGC--UCCGGGUuguggauggcggacuGCGUCAUGGg -3'
miRNA:   3'- gCCGUUUGcaAGGUUCG---------------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 105273 0.69 0.972992
Target:  5'- aGGCGGuugaGUUCCGucaacAGCGCGuUCAUGGc -3'
miRNA:   3'- gCCGUUug--CAAGGU-----UCGUGC-GGUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.