miRNA display CGI


Results 141 - 160 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 109424 0.69 0.975593
Target:  5'- aCGGCGAuGCGgUCCAGGCugACGCCc--- -3'
miRNA:   3'- -GCCGUU-UGCaAGGUUCG--UGCGGuacc -5'
13971 3' -51.8 NC_003521.1 + 187625 0.69 0.975593
Target:  5'- gGGCGAGcCGggCC--GCGCGCCGcUGGc -3'
miRNA:   3'- gCCGUUU-GCaaGGuuCGUGCGGU-ACC- -5'
13971 3' -51.8 NC_003521.1 + 211451 0.69 0.975593
Target:  5'- uCGGCcucGCGgUCgGGGCAgGCCAUGa -3'
miRNA:   3'- -GCCGuu-UGCaAGgUUCGUgCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 70051 0.69 0.978006
Target:  5'- gGGCGccaaGACGUUCgAGGUGCauuCCAUGGc -3'
miRNA:   3'- gCCGU----UUGCAAGgUUCGUGc--GGUACC- -5'
13971 3' -51.8 NC_003521.1 + 114633 0.69 0.978006
Target:  5'- uGGCcuACGUgaaCCGGGUGCGCaccgaCAUGGg -3'
miRNA:   3'- gCCGuuUGCAa--GGUUCGUGCG-----GUACC- -5'
13971 3' -51.8 NC_003521.1 + 167212 0.69 0.980239
Target:  5'- uGGCAGGCGcgCCGcaucuugguguAGgGCGCCA-GGu -3'
miRNA:   3'- gCCGUUUGCaaGGU-----------UCgUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 120548 0.69 0.975593
Target:  5'- gCGGCcGGCGgucCCGGGggaGCGCCcgGGg -3'
miRNA:   3'- -GCCGuUUGCaa-GGUUCg--UGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 71530 0.69 0.982298
Target:  5'- cCGGCcGACGUcaCCGAGCcCGCCGc-- -3'
miRNA:   3'- -GCCGuUUGCAa-GGUUCGuGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 78872 0.69 0.982298
Target:  5'- cCGGUcGAUGa-CCAGGCGCGUCAgGGg -3'
miRNA:   3'- -GCCGuUUGCaaGGUUCGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 57236 0.69 0.982298
Target:  5'- aGGCGAGCGgcUCucGCGCgGCCAguUGGc -3'
miRNA:   3'- gCCGUUUGCaaGGuuCGUG-CGGU--ACC- -5'
13971 3' -51.8 NC_003521.1 + 117879 0.69 0.980239
Target:  5'- cCGGCGAGg---CCGAGCACGgCcgGGc -3'
miRNA:   3'- -GCCGUUUgcaaGGUUCGUGCgGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 174666 0.69 0.980239
Target:  5'- aGGC-GGCGUUCUuAGcCACGUCAUGc -3'
miRNA:   3'- gCCGuUUGCAAGGuUC-GUGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 180636 0.69 0.978006
Target:  5'- aCGGCGcGCGUUCU---CACGCCGcGGc -3'
miRNA:   3'- -GCCGUuUGCAAGGuucGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 119980 0.69 0.978006
Target:  5'- gGGCGucGACGagCCGGGCgacauGCGCCGcUGGc -3'
miRNA:   3'- gCCGU--UUGCaaGGUUCG-----UGCGGU-ACC- -5'
13971 3' -51.8 NC_003521.1 + 42612 0.69 0.978006
Target:  5'- aCGGCcgccGGCGgcgCCGucGC-CGCCAUGGa -3'
miRNA:   3'- -GCCGu---UUGCaa-GGUu-CGuGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 76949 0.69 0.978006
Target:  5'- gCGGU--GCGUUCC-AGCAUGUCGcGGc -3'
miRNA:   3'- -GCCGuuUGCAAGGuUCGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 101989 0.69 0.977773
Target:  5'- aGGCGGugcagcuGCGUgUCCAGGCACagGgCGUGGu -3'
miRNA:   3'- gCCGUU-------UGCA-AGGUUCGUG--CgGUACC- -5'
13971 3' -51.8 NC_003521.1 + 142440 0.69 0.975593
Target:  5'- uCGGCAccAGCGUcUUCAGGCACGCg---- -3'
miRNA:   3'- -GCCGU--UUGCA-AGGUUCGUGCGguacc -5'
13971 3' -51.8 NC_003521.1 + 144149 0.69 0.972992
Target:  5'- gGGCuccgAGGCGUugcucUUCAAGCACGCCGg-- -3'
miRNA:   3'- gCCG----UUUGCA-----AGGUUCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 91176 0.69 0.972174
Target:  5'- gGGCGcaugcgccucuggaAGCGguaCCGcgGGCGCGUCGUGGg -3'
miRNA:   3'- gCCGU--------------UUGCaa-GGU--UCGUGCGGUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.