Results 41 - 60 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13971 | 3' | -51.8 | NC_003521.1 | + | 71030 | 0.71 | 0.944689 |
Target: 5'- cCGGCGGAgGauagUCCcucGAGCgcccaaagcgcgGCGCCAUGGg -3' miRNA: 3'- -GCCGUUUgCa---AGG---UUCG------------UGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 27457 | 0.71 | 0.949002 |
Target: 5'- uCGGCcguGAGCG--CCAGGCugGCCA-GGu -3' miRNA: 3'- -GCCG---UUUGCaaGGUUCGugCGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 33118 | 0.71 | 0.944689 |
Target: 5'- aCGGCGuAGCGggCCuucuccAGCACGCCgAUGa -3' miRNA: 3'- -GCCGU-UUGCaaGGu-----UCGUGCGG-UACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 40473 | 0.71 | 0.949002 |
Target: 5'- aCGGaUAGAUGUgUCCGcGGCGCGCCAcGGc -3' miRNA: 3'- -GCC-GUUUGCA-AGGU-UCGUGCGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 65376 | 0.7 | 0.960223 |
Target: 5'- aCGGCGcgccgccGAuCGUacgCCGAGCACGCCAc-- -3' miRNA: 3'- -GCCGU-------UU-GCAa--GGUUCGUGCGGUacc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 30912 | 0.7 | 0.960577 |
Target: 5'- gCGGCAGGCGagagcggUCCuggGGCAguCGCCGUGc -3' miRNA: 3'- -GCCGUUUGCa------AGGu--UCGU--GCGGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 89032 | 0.7 | 0.960577 |
Target: 5'- aCGGCGGugaGUUCCucGC-CGCuCAUGGu -3' miRNA: 3'- -GCCGUUug-CAAGGuuCGuGCG-GUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 126532 | 0.7 | 0.963662 |
Target: 5'- aGGCGAGCGcagCCAGcugugguacucguGCGCgaagGCCGUGGg -3' miRNA: 3'- gCCGUUUGCaa-GGUU-------------CGUG----CGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 70736 | 0.7 | 0.963994 |
Target: 5'- cCGGCAcuuCG-UCCAgcugcAGCGCGCCGcGGc -3' miRNA: 3'- -GCCGUuu-GCaAGGU-----UCGUGCGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 76194 | 0.7 | 0.970196 |
Target: 5'- aGGCGccacagGAUGggCCAgaagcccgccGGCACGCCcUGGg -3' miRNA: 3'- gCCGU------UUGCaaGGU----------UCGUGCGGuACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 194158 | 0.7 | 0.963994 |
Target: 5'- uCGGCGGGCgGUUCCAu---CGCCcgGGu -3' miRNA: 3'- -GCCGUUUG-CAAGGUucguGCGGuaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 116010 | 0.7 | 0.967198 |
Target: 5'- aGGagcAGCGUcUCCAGGC-CGCgGUGGa -3' miRNA: 3'- gCCgu-UUGCA-AGGUUCGuGCGgUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 213029 | 0.7 | 0.967198 |
Target: 5'- gGGCGAGCcggCCGAGCGgGCCGg-- -3' miRNA: 3'- gCCGUUUGcaaGGUUCGUgCGGUacc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 56032 | 0.7 | 0.956942 |
Target: 5'- gCGGCcaccaGGGCG-UCCAGGCGCGCguUGc -3' miRNA: 3'- -GCCG-----UUUGCaAGGUUCGUGCGguACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 125193 | 0.7 | 0.970196 |
Target: 5'- uGGUGGAC--UCCAuGGC-CGCCAUGGu -3' miRNA: 3'- gCCGUUUGcaAGGU-UCGuGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 116004 | 0.7 | 0.967198 |
Target: 5'- uCGcGCAggagcAGCGUcUCCAGGC-CGCgGUGGa -3' miRNA: 3'- -GC-CGU-----UUGCA-AGGUUCGuGCGgUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 232725 | 0.7 | 0.970196 |
Target: 5'- gGGCAGACGacUCCGAGC-CGCUg--- -3' miRNA: 3'- gCCGUUUGCa-AGGUUCGuGCGGuacc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 59264 | 0.7 | 0.970196 |
Target: 5'- -uGCGGGCGUUCgUAAGCGCGCUAc-- -3' miRNA: 3'- gcCGUUUGCAAG-GUUCGUGCGGUacc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 46521 | 0.7 | 0.960577 |
Target: 5'- uGGCAcacgGGCGUcuucUCCAGGCGCaCCA-GGg -3' miRNA: 3'- gCCGU----UUGCA----AGGUUCGUGcGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 237178 | 0.7 | 0.956942 |
Target: 5'- aGGCAGACGgcggcggCCGuGGCACGCUAg-- -3' miRNA: 3'- gCCGUUUGCaa-----GGU-UCGUGCGGUacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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