Results 81 - 100 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13971 | 3' | -51.8 | NC_003521.1 | + | 42612 | 0.69 | 0.978006 |
Target: 5'- aCGGCcgccGGCGgcgCCGucGC-CGCCAUGGa -3' miRNA: 3'- -GCCGu---UUGCaa-GGUu-CGuGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 101989 | 0.69 | 0.977773 |
Target: 5'- aGGCGGugcagcuGCGUgUCCAGGCACagGgCGUGGu -3' miRNA: 3'- gCCGUU-------UGCA-AGGUUCGUG--CgGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 142440 | 0.69 | 0.975593 |
Target: 5'- uCGGCAccAGCGUcUUCAGGCACGCg---- -3' miRNA: 3'- -GCCGU--UUGCA-AGGUUCGUGCGguacc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 144149 | 0.69 | 0.972992 |
Target: 5'- gGGCuccgAGGCGUugcucUUCAAGCACGCCGg-- -3' miRNA: 3'- gCCG----UUUGCA-----AGGUUCGUGCGGUacc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 70051 | 0.69 | 0.978006 |
Target: 5'- gGGCGccaaGACGUUCgAGGUGCauuCCAUGGc -3' miRNA: 3'- gCCGU----UUGCAAGgUUCGUGc--GGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 114633 | 0.69 | 0.978006 |
Target: 5'- uGGCcuACGUgaaCCGGGUGCGCaccgaCAUGGg -3' miRNA: 3'- gCCGuuUGCAa--GGUUCGUGCG-----GUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 105273 | 0.69 | 0.972992 |
Target: 5'- aGGCGGuugaGUUCCGucaacAGCGCGuUCAUGGc -3' miRNA: 3'- gCCGUUug--CAAGGU-----UCGUGC-GGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 148094 | 0.69 | 0.975593 |
Target: 5'- aGGCAGACGgUCCGgAGguCGCgGgUGGa -3' miRNA: 3'- gCCGUUUGCaAGGU-UCguGCGgU-ACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 109424 | 0.69 | 0.975593 |
Target: 5'- aCGGCGAuGCGgUCCAGGCugACGCCc--- -3' miRNA: 3'- -GCCGUU-UGCaAGGUUCG--UGCGGuacc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 99970 | 0.69 | 0.975593 |
Target: 5'- uCGGCcgagaccgcgAAGCGcUCC-AGCACGUCGUGa -3' miRNA: 3'- -GCCG----------UUUGCaAGGuUCGUGCGGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 91176 | 0.69 | 0.972174 |
Target: 5'- gGGCGcaugcgccucuggaAGCGguaCCGcgGGCGCGUCGUGGg -3' miRNA: 3'- gCCGU--------------UUGCaa-GGU--UCGUGCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 167212 | 0.69 | 0.980239 |
Target: 5'- uGGCAGGCGcgCCGcaucuugguguAGgGCGCCA-GGu -3' miRNA: 3'- gCCGUUUGCaaGGU-----------UCgUGCGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 113975 | 0.68 | 0.988957 |
Target: 5'- aCGGCAGGCGgccggCCGGGCACcgGCUg--- -3' miRNA: 3'- -GCCGUUUGCaa---GGUUCGUG--CGGuacc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 155636 | 0.68 | 0.987513 |
Target: 5'- gCGGCGGugGUagCAGaaGCGCCGUGc -3' miRNA: 3'- -GCCGUUugCAagGUUcgUGCGGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 132405 | 0.68 | 0.988819 |
Target: 5'- cCGGCAGACGcugUUUCGccugugcGGCgACGCCGcUGGu -3' miRNA: 3'- -GCCGUUUGC---AAGGU-------UCG-UGCGGU-ACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 169436 | 0.68 | 0.987513 |
Target: 5'- -aGCAGGCGgUCCucgaacAGCGgguCGCCGUGGa -3' miRNA: 3'- gcCGUUUGCaAGGu-----UCGU---GCGGUACC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 155298 | 0.68 | 0.988957 |
Target: 5'- gCGGC---UGUUCCucucGCACGCCGaGGu -3' miRNA: 3'- -GCCGuuuGCAAGGuu--CGUGCGGUaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 119345 | 0.68 | 0.988957 |
Target: 5'- gGGCAGGgGUccggccUCCAuGGaCACGCCggGGa -3' miRNA: 3'- gCCGUUUgCA------AGGU-UC-GUGCGGuaCC- -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 126155 | 0.68 | 0.988957 |
Target: 5'- aCGGCGAACaggUCCugcacgcGCACGcCCAUGu -3' miRNA: 3'- -GCCGUUUGca-AGGuu-----CGUGC-GGUACc -5' |
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13971 | 3' | -51.8 | NC_003521.1 | + | 130754 | 0.68 | 0.988957 |
Target: 5'- uCGGCGGGCG---CGAGCgccGCGCCggGGg -3' miRNA: 3'- -GCCGUUUGCaagGUUCG---UGCGGuaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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