miRNA display CGI


Results 121 - 140 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 155298 0.68 0.988957
Target:  5'- gCGGC---UGUUCCucucGCACGCCGaGGu -3'
miRNA:   3'- -GCCGuuuGCAAGGuu--CGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 198209 0.68 0.985927
Target:  5'- uGGCGgcGACGgcgCCGccGGCG-GCCGUGGu -3'
miRNA:   3'- gCCGU--UUGCaa-GGU--UCGUgCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 95826 0.68 0.987513
Target:  5'- uCGGCGcGCGaggCCucgguGGCAUGCCGcUGGc -3'
miRNA:   3'- -GCCGUuUGCaa-GGu----UCGUGCGGU-ACC- -5'
13971 3' -51.8 NC_003521.1 + 175196 0.68 0.987513
Target:  5'- uGGCGcGCGUcagcUCCucGCGgGCCGUGu -3'
miRNA:   3'- gCCGUuUGCA----AGGuuCGUgCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 138794 0.67 0.993481
Target:  5'- gCGGCAAccgccaggagauGCccUCCAuGGCGCGCCugAUGGc -3'
miRNA:   3'- -GCCGUU------------UGcaAGGU-UCGUGCGG--UACC- -5'
13971 3' -51.8 NC_003521.1 + 97612 0.67 0.993481
Target:  5'- aCGGC-GACGgcUCCGGcCugGCCAUGa -3'
miRNA:   3'- -GCCGuUUGCa-AGGUUcGugCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 162368 0.67 0.991453
Target:  5'- gGGCc-GCGUUCCcAGCcGCGCCGa-- -3'
miRNA:   3'- gCCGuuUGCAAGGuUCG-UGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 150506 0.67 0.994258
Target:  5'- aCGGCGccGGCGgggCCcugcuagGAGCGggaGCCGUGGg -3'
miRNA:   3'- -GCCGU--UUGCaa-GG-------UUCGUg--CGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 352 0.67 0.994339
Target:  5'- gGGCAAACGaUgUggGCGgcgUGCUGUGGa -3'
miRNA:   3'- gCCGUUUGCaAgGuuCGU---GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 236272 0.67 0.994339
Target:  5'- uCGGCAcuCGaUCCucaGAGCaACGCCucgGGg -3'
miRNA:   3'- -GCCGUuuGCaAGG---UUCG-UGCGGua-CC- -5'
13971 3' -51.8 NC_003521.1 + 135511 0.67 0.994339
Target:  5'- gCGGCGAcgucgcgcgGCGUccCCAcGCcCGCCAUGa -3'
miRNA:   3'- -GCCGUU---------UGCAa-GGUuCGuGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 37428 0.67 0.993481
Target:  5'- uGGC--GCGgcgCCGAGCcucugaaggugACGCUGUGGg -3'
miRNA:   3'- gCCGuuUGCaa-GGUUCG-----------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 239644 0.67 0.992522
Target:  5'- uGGCAcaGGCcgUCCAgucccguaGGCgGCGCCGUGGc -3'
miRNA:   3'- gCCGU--UUGcaAGGU--------UCG-UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 213462 0.67 0.992522
Target:  5'- aGGCGucgcacgucauGACGgcgCCGGuGCACGCCAUccacaGGg -3'
miRNA:   3'- gCCGU-----------UUGCaa-GGUU-CGUGCGGUA-----CC- -5'
13971 3' -51.8 NC_003521.1 + 170744 0.67 0.991453
Target:  5'- uGGCAuuauCGgUCU-GGUugGCCAUGGa -3'
miRNA:   3'- gCCGUuu--GCaAGGuUCGugCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 142554 0.67 0.991453
Target:  5'- aCGGCuuguCGcccgCCAGGCuCGCCGUGc -3'
miRNA:   3'- -GCCGuuu-GCaa--GGUUCGuGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 23002 0.67 0.991453
Target:  5'- aCGGUGAuaGCGgcaUCCGAGgAgGCCAaUGGg -3'
miRNA:   3'- -GCCGUU--UGCa--AGGUUCgUgCGGU-ACC- -5'
13971 3' -51.8 NC_003521.1 + 102830 0.67 0.991453
Target:  5'- gCGGCGcugcgagaAGCGcgCCAgGGCGC-CCGUGGc -3'
miRNA:   3'- -GCCGU--------UUGCaaGGU-UCGUGcGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 107807 0.67 0.994258
Target:  5'- aCGGUgauuaGggUGUUCCAccgcGGCACGUuguagagCAUGGg -3'
miRNA:   3'- -GCCG-----UuuGCAAGGU----UCGUGCG-------GUACC- -5'
13971 3' -51.8 NC_003521.1 + 128151 0.67 0.995104
Target:  5'- uCGGCGAAgGccUgCAGGCAgGgCGUGGg -3'
miRNA:   3'- -GCCGUUUgCa-AgGUUCGUgCgGUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.